Hb_003086_080

Information

Type -
Description -
Location Contig3086: 59041-66424
Sequence    

Annotation

kegg
ID rcu:RCOM_0422030
description hypothetical protein
nr
ID XP_012074275.1
description PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KM48
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08727 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32578: 58932-60623 , PASA_asmbl_32579: 66362-66686
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003086_080 0.0 - - PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]
2 Hb_008566_030 0.0919352935 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
3 Hb_000337_050 0.1001968809 - - PREDICTED: chloroplast envelope membrane protein [Jatropha curcas]
4 Hb_005144_050 0.1017687979 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
5 Hb_001307_030 0.1037614756 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
6 Hb_024128_020 0.1044827945 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
7 Hb_000085_400 0.1058632556 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
8 Hb_000329_210 0.1075821868 - - Golgi snare 12 isoform 1 [Theobroma cacao]
9 Hb_001818_100 0.1092546346 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
10 Hb_003025_100 0.1099865695 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
11 Hb_000556_090 0.1111977335 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
12 Hb_006478_020 0.11184591 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
13 Hb_001366_180 0.1119121524 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
14 Hb_008176_010 0.1121665864 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20090 [Jatropha curcas]
15 Hb_010931_130 0.1128720828 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]
16 Hb_091296_010 0.113090604 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
17 Hb_000116_260 0.1132595851 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
18 Hb_000617_200 0.1134658097 - - f-actin capping protein alpha, putative [Ricinus communis]
19 Hb_001341_070 0.1138453935 - - PREDICTED: uncharacterized protein LOC105628138 isoform X1 [Jatropha curcas]
20 Hb_011249_020 0.1142475366 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]

Gene co-expression network

sample Hb_003086_080 Hb_003086_080 Hb_008566_030 Hb_008566_030 Hb_003086_080--Hb_008566_030 Hb_000337_050 Hb_000337_050 Hb_003086_080--Hb_000337_050 Hb_005144_050 Hb_005144_050 Hb_003086_080--Hb_005144_050 Hb_001307_030 Hb_001307_030 Hb_003086_080--Hb_001307_030 Hb_024128_020 Hb_024128_020 Hb_003086_080--Hb_024128_020 Hb_000085_400 Hb_000085_400 Hb_003086_080--Hb_000085_400 Hb_008566_030--Hb_001307_030 Hb_001541_120 Hb_001541_120 Hb_008566_030--Hb_001541_120 Hb_000116_260 Hb_000116_260 Hb_008566_030--Hb_000116_260 Hb_002677_020 Hb_002677_020 Hb_008566_030--Hb_002677_020 Hb_001514_120 Hb_001514_120 Hb_008566_030--Hb_001514_120 Hb_007416_060 Hb_007416_060 Hb_008566_030--Hb_007416_060 Hb_000289_110 Hb_000289_110 Hb_000337_050--Hb_000289_110 Hb_018133_090 Hb_018133_090 Hb_000337_050--Hb_018133_090 Hb_001366_180 Hb_001366_180 Hb_000337_050--Hb_001366_180 Hb_000337_050--Hb_005144_050 Hb_003020_260 Hb_003020_260 Hb_000337_050--Hb_003020_260 Hb_005144_050--Hb_001366_180 Hb_025098_010 Hb_025098_010 Hb_005144_050--Hb_025098_010 Hb_185255_010 Hb_185255_010 Hb_005144_050--Hb_185255_010 Hb_002289_080 Hb_002289_080 Hb_005144_050--Hb_002289_080 Hb_005144_050--Hb_000289_110 Hb_005144_050--Hb_024128_020 Hb_001307_030--Hb_025098_010 Hb_001307_030--Hb_185255_010 Hb_011249_020 Hb_011249_020 Hb_001307_030--Hb_011249_020 Hb_000297_120 Hb_000297_120 Hb_001307_030--Hb_000297_120 Hb_000329_210 Hb_000329_210 Hb_001307_030--Hb_000329_210 Hb_001004_070 Hb_001004_070 Hb_024128_020--Hb_001004_070 Hb_029879_070 Hb_029879_070 Hb_024128_020--Hb_029879_070 Hb_024128_020--Hb_001366_180 Hb_006478_020 Hb_006478_020 Hb_024128_020--Hb_006478_020 Hb_029510_050 Hb_029510_050 Hb_024128_020--Hb_029510_050 Hb_000749_220 Hb_000749_220 Hb_000085_400--Hb_000749_220 Hb_000085_400--Hb_029879_070 Hb_001163_100 Hb_001163_100 Hb_000085_400--Hb_001163_100 Hb_001024_020 Hb_001024_020 Hb_000085_400--Hb_001024_020 Hb_002685_210 Hb_002685_210 Hb_000085_400--Hb_002685_210 Hb_044736_010 Hb_044736_010 Hb_000085_400--Hb_044736_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.78078 1.40978 3.37681 6.45036 2.11682 3.47888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.15688 4.99731 7.9463 3.32578 8.08314

CAGE analysis