Hb_000085_400

Information

Type -
Description -
Location Contig85: 371851-376095
Sequence    

Annotation

kegg
ID rcu:RCOM_0046640
description Heterogeneous nuclear ribonucleoprotein 27C, putative
nr
ID XP_002529044.1
description Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
swissprot
ID Q8W034
description Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 SV=1
trembl
ID B9SSS5
description Heterogeneous nuclear ribonucleoprotein 27C, putative OS=Ricinus communis GN=RCOM_0046640 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60390: 371842-376005 , PASA_asmbl_60391: 368888-373759
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_400 0.0 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
2 Hb_000749_220 0.0988849821 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
3 Hb_029879_070 0.1004255022 - - PREDICTED: phospholipase A I [Jatropha curcas]
4 Hb_001163_100 0.1023562131 - - serine/threonine protein kinase, putative [Ricinus communis]
5 Hb_001024_020 0.1026565985 - - hypothetical protein JCGZ_08989 [Jatropha curcas]
6 Hb_002685_210 0.1040139313 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
7 Hb_044736_010 0.1047626266 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_000483_220 0.1047797499 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
9 Hb_000059_050 0.105291264 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
10 Hb_003086_080 0.1058632556 - - PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]
11 Hb_000260_010 0.1071423663 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
12 Hb_164010_030 0.1074554723 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
13 Hb_024128_020 0.1077410007 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
14 Hb_006478_020 0.1092680028 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
15 Hb_000172_290 0.1095477389 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
16 Hb_000161_060 0.1145936083 - - PREDICTED: probable magnesium transporter NIPA4 [Jatropha curcas]
17 Hb_000340_230 0.1146098799 - - synapse-associated protein, putative [Ricinus communis]
18 Hb_003177_030 0.1165627386 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
19 Hb_001004_070 0.1184459784 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004672_040 0.1184896612 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]

Gene co-expression network

sample Hb_000085_400 Hb_000085_400 Hb_000749_220 Hb_000749_220 Hb_000085_400--Hb_000749_220 Hb_029879_070 Hb_029879_070 Hb_000085_400--Hb_029879_070 Hb_001163_100 Hb_001163_100 Hb_000085_400--Hb_001163_100 Hb_001024_020 Hb_001024_020 Hb_000085_400--Hb_001024_020 Hb_002685_210 Hb_002685_210 Hb_000085_400--Hb_002685_210 Hb_044736_010 Hb_044736_010 Hb_000085_400--Hb_044736_010 Hb_003177_030 Hb_003177_030 Hb_000749_220--Hb_003177_030 Hb_000172_290 Hb_000172_290 Hb_000749_220--Hb_000172_290 Hb_000477_060 Hb_000477_060 Hb_000749_220--Hb_000477_060 Hb_000003_250 Hb_000003_250 Hb_000749_220--Hb_000003_250 Hb_005490_030 Hb_005490_030 Hb_000749_220--Hb_005490_030 Hb_001159_130 Hb_001159_130 Hb_000749_220--Hb_001159_130 Hb_000254_090 Hb_000254_090 Hb_029879_070--Hb_000254_090 Hb_029510_050 Hb_029510_050 Hb_029879_070--Hb_029510_050 Hb_006275_070 Hb_006275_070 Hb_029879_070--Hb_006275_070 Hb_029879_070--Hb_002685_210 Hb_027380_220 Hb_027380_220 Hb_029879_070--Hb_027380_220 Hb_005291_050 Hb_005291_050 Hb_029879_070--Hb_005291_050 Hb_000260_010 Hb_000260_010 Hb_001163_100--Hb_000260_010 Hb_000340_230 Hb_000340_230 Hb_001163_100--Hb_000340_230 Hb_004672_040 Hb_004672_040 Hb_001163_100--Hb_004672_040 Hb_164010_030 Hb_164010_030 Hb_001163_100--Hb_164010_030 Hb_000009_560 Hb_000009_560 Hb_001163_100--Hb_000009_560 Hb_001377_490 Hb_001377_490 Hb_001163_100--Hb_001377_490 Hb_002289_080 Hb_002289_080 Hb_001024_020--Hb_002289_080 Hb_001024_020--Hb_000172_290 Hb_024128_020 Hb_024128_020 Hb_001024_020--Hb_024128_020 Hb_054865_150 Hb_054865_150 Hb_001024_020--Hb_054865_150 Hb_022833_100 Hb_022833_100 Hb_001024_020--Hb_022833_100 Hb_005144_050 Hb_005144_050 Hb_001024_020--Hb_005144_050 Hb_002685_210--Hb_000172_290 Hb_002685_210--Hb_029510_050 Hb_002685_210--Hb_005490_030 Hb_002685_210--Hb_000254_090 Hb_000631_080 Hb_000631_080 Hb_002685_210--Hb_000631_080 Hb_050454_010 Hb_050454_010 Hb_044736_010--Hb_050454_010 Hb_002445_120 Hb_002445_120 Hb_044736_010--Hb_002445_120 Hb_001018_110 Hb_001018_110 Hb_044736_010--Hb_001018_110 Hb_044736_010--Hb_022833_100 Hb_001018_130 Hb_001018_130 Hb_044736_010--Hb_001018_130 Hb_012322_010 Hb_012322_010 Hb_044736_010--Hb_012322_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7952 6.57685 7.74798 29.1144 13.5108 19.1747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.7613 16.7784 33.5179 12.762 23.6633

CAGE analysis