Hb_000254_140

Information

Type -
Description -
Location Contig254: 161939-162406
Sequence    

Annotation

kegg
ID rcu:RCOM_1493770
description 30S ribosomal protein S17, putative
nr
ID XP_012073375.1
description PREDICTED: 30S ribosomal protein S17, chloroplastic [Jatropha curcas]
swissprot
ID P16180
description 30S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana GN=RPS17 PE=1 SV=1
trembl
ID A0A067KQL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06304 PE=3 SV=1
Gene Ontology
ID GO:0000312
description 30s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26548: 161927-162634 , PASA_asmbl_26549: 161987-162860
cDNA
(Sanger)
(ID:Location)		 001_P23.ab1: 161925-162521 , 010_D02.ab1: 161925-162515 , 010_O02.ab1: 161927-162521 , 019_J18.ab1: 161927-162585 , 021_F15.ab1: 161926-162536 , 036_O24.ab1: 161922-162515 , 040_J24.ab1: 161967-162513 , 042_P04r.ab1: 160267-161479 , 048_N10.ab1: 161927-162512

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000254_140 0.0 - - PREDICTED: 30S ribosomal protein S17, chloroplastic [Jatropha curcas]
2 Hb_004109_160 0.116167106 - - PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic [Jatropha curcas]
3 Hb_001790_030 0.1324800086 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Jatropha curcas]
4 Hb_000984_240 0.1343574403 - - hypothetical protein JCGZ_15962 [Jatropha curcas]
5 Hb_000723_290 0.1365402571 - - calcium lipid binding protein, putative [Ricinus communis]
6 Hb_007632_170 0.1472196504 - - hypothetical protein JCGZ_01028 [Jatropha curcas]
7 Hb_020378_060 0.1645229166 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
8 Hb_000175_260 0.1662907376 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Populus euphratica]
9 Hb_000473_060 0.1674697757 - - PREDICTED: psbP domain-containing protein 2, chloroplastic [Jatropha curcas]
10 Hb_003349_030 0.1682744253 - - PREDICTED: uncharacterized protein LOC105628283 [Jatropha curcas]
11 Hb_001898_180 0.168758326 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
12 Hb_010577_040 0.1688229845 - - PREDICTED: uncharacterized protein LOC105643738 [Jatropha curcas]
13 Hb_005846_030 0.1697220184 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
14 Hb_000167_050 0.1752523989 - - PREDICTED: uncharacterized protein LOC105641106 [Jatropha curcas]
15 Hb_003642_010 0.1763818171 - - PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_000176_010 0.1822785587 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
17 Hb_009780_050 0.1829196491 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
18 Hb_001789_200 0.1838260318 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
19 Hb_001621_060 0.1840741608 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
20 Hb_000105_120 0.1841671005 - - PREDICTED: uncharacterized protein LOC105650827 [Jatropha curcas]

Gene co-expression network

sample Hb_000254_140 Hb_000254_140 Hb_004109_160 Hb_004109_160 Hb_000254_140--Hb_004109_160 Hb_001790_030 Hb_001790_030 Hb_000254_140--Hb_001790_030 Hb_000984_240 Hb_000984_240 Hb_000254_140--Hb_000984_240 Hb_000723_290 Hb_000723_290 Hb_000254_140--Hb_000723_290 Hb_007632_170 Hb_007632_170 Hb_000254_140--Hb_007632_170 Hb_020378_060 Hb_020378_060 Hb_000254_140--Hb_020378_060 Hb_004109_160--Hb_000723_290 Hb_000473_060 Hb_000473_060 Hb_004109_160--Hb_000473_060 Hb_002078_300 Hb_002078_300 Hb_004109_160--Hb_002078_300 Hb_001621_060 Hb_001621_060 Hb_004109_160--Hb_001621_060 Hb_010577_040 Hb_010577_040 Hb_004109_160--Hb_010577_040 Hb_003813_020 Hb_003813_020 Hb_001790_030--Hb_003813_020 Hb_001790_030--Hb_000984_240 Hb_003349_030 Hb_003349_030 Hb_001790_030--Hb_003349_030 Hb_005846_030 Hb_005846_030 Hb_001790_030--Hb_005846_030 Hb_001712_020 Hb_001712_020 Hb_001790_030--Hb_001712_020 Hb_000167_050 Hb_000167_050 Hb_000984_240--Hb_000167_050 Hb_000120_770 Hb_000120_770 Hb_000984_240--Hb_000120_770 Hb_000394_180 Hb_000394_180 Hb_000984_240--Hb_000394_180 Hb_000984_240--Hb_003349_030 Hb_000723_290--Hb_010577_040 Hb_000723_290--Hb_000167_050 Hb_000365_370 Hb_000365_370 Hb_000723_290--Hb_000365_370 Hb_001124_180 Hb_001124_180 Hb_000723_290--Hb_001124_180 Hb_000176_010 Hb_000176_010 Hb_000723_290--Hb_000176_010 Hb_007632_170--Hb_005846_030 Hb_001898_180 Hb_001898_180 Hb_007632_170--Hb_001898_180 Hb_007632_170--Hb_010577_040 Hb_019040_030 Hb_019040_030 Hb_007632_170--Hb_019040_030 Hb_000156_210 Hb_000156_210 Hb_007632_170--Hb_000156_210 Hb_007632_170--Hb_002078_300 Hb_020378_060--Hb_001898_180 Hb_020378_060--Hb_010577_040 Hb_000388_060 Hb_000388_060 Hb_020378_060--Hb_000388_060 Hb_000983_070 Hb_000983_070 Hb_020378_060--Hb_000983_070 Hb_000622_290 Hb_000622_290 Hb_020378_060--Hb_000622_290 Hb_005489_090 Hb_005489_090 Hb_020378_060--Hb_005489_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.9772 15.5629 84.3271 227.811 11.5615 71.4798
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
154.602 187.053 60.1865 44.8656 360.725

CAGE analysis