Hb_000365_370

Information

Type -
Description -
Location Contig365: 340272-341225
Sequence    

Annotation

kegg
ID rcu:RCOM_0126320
description hypothetical protein
nr
ID XP_002531810.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T0P1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0126320 PE=4 SV=1
Gene Ontology
ID GO:0009987
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_370 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000723_290 0.1096268109 - - calcium lipid binding protein, putative [Ricinus communis]
3 Hb_003453_050 0.1151431876 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
4 Hb_000167_050 0.1399576794 - - PREDICTED: uncharacterized protein LOC105641106 [Jatropha curcas]
5 Hb_000107_510 0.1417507801 - - phosphate transporter [Manihot esculenta]
6 Hb_010577_040 0.1418986669 - - PREDICTED: uncharacterized protein LOC105643738 [Jatropha curcas]
7 Hb_004128_070 0.1465313136 - - PREDICTED: thioredoxin-like protein AAED1, chloroplastic [Jatropha curcas]
8 Hb_001399_010 0.1490733566 - - ATP binding protein, putative [Ricinus communis]
9 Hb_027298_010 0.1504576165 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000032_370 0.1532205894 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
11 Hb_009780_050 0.1586292297 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
12 Hb_004317_030 0.1596854725 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
13 Hb_019762_050 0.159851 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
14 Hb_042202_060 0.1600683612 - - PREDICTED: probable glycosyltransferase At5g03795 [Jatropha curcas]
15 Hb_065525_120 0.1628127649 - - dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]
16 Hb_005846_030 0.1640005776 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
17 Hb_000622_290 0.1649153064 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
18 Hb_007741_100 0.1674477318 transcription factor TF Family: GRAS PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6 [Jatropha curcas]
19 Hb_001946_380 0.1691841409 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
20 Hb_020378_060 0.169567603 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]

Gene co-expression network

sample Hb_000365_370 Hb_000365_370 Hb_000723_290 Hb_000723_290 Hb_000365_370--Hb_000723_290 Hb_003453_050 Hb_003453_050 Hb_000365_370--Hb_003453_050 Hb_000167_050 Hb_000167_050 Hb_000365_370--Hb_000167_050 Hb_000107_510 Hb_000107_510 Hb_000365_370--Hb_000107_510 Hb_010577_040 Hb_010577_040 Hb_000365_370--Hb_010577_040 Hb_004128_070 Hb_004128_070 Hb_000365_370--Hb_004128_070 Hb_000723_290--Hb_010577_040 Hb_004109_160 Hb_004109_160 Hb_000723_290--Hb_004109_160 Hb_000723_290--Hb_000167_050 Hb_001124_180 Hb_001124_180 Hb_000723_290--Hb_001124_180 Hb_000176_010 Hb_000176_010 Hb_000723_290--Hb_000176_010 Hb_000622_290 Hb_000622_290 Hb_003453_050--Hb_000622_290 Hb_001946_380 Hb_001946_380 Hb_003453_050--Hb_001946_380 Hb_011606_020 Hb_011606_020 Hb_003453_050--Hb_011606_020 Hb_007441_080 Hb_007441_080 Hb_003453_050--Hb_007441_080 Hb_001671_030 Hb_001671_030 Hb_003453_050--Hb_001671_030 Hb_000638_160 Hb_000638_160 Hb_000167_050--Hb_000638_160 Hb_000394_180 Hb_000394_180 Hb_000167_050--Hb_000394_180 Hb_009780_050 Hb_009780_050 Hb_000167_050--Hb_009780_050 Hb_005846_030 Hb_005846_030 Hb_000167_050--Hb_005846_030 Hb_000167_050--Hb_000176_010 Hb_062522_010 Hb_062522_010 Hb_000107_510--Hb_062522_010 Hb_000107_510--Hb_000167_050 Hb_031527_110 Hb_031527_110 Hb_000107_510--Hb_031527_110 Hb_001904_050 Hb_001904_050 Hb_000107_510--Hb_001904_050 Hb_002174_040 Hb_002174_040 Hb_000107_510--Hb_002174_040 Hb_003935_080 Hb_003935_080 Hb_010577_040--Hb_003935_080 Hb_005489_090 Hb_005489_090 Hb_010577_040--Hb_005489_090 Hb_001621_060 Hb_001621_060 Hb_010577_040--Hb_001621_060 Hb_000594_100 Hb_000594_100 Hb_010577_040--Hb_000594_100 Hb_020378_060 Hb_020378_060 Hb_010577_040--Hb_020378_060 Hb_000032_370 Hb_000032_370 Hb_004128_070--Hb_000032_370 Hb_001399_010 Hb_001399_010 Hb_004128_070--Hb_001399_010 Hb_004128_070--Hb_005846_030 Hb_010422_070 Hb_010422_070 Hb_004128_070--Hb_010422_070 Hb_065525_120 Hb_065525_120 Hb_004128_070--Hb_065525_120 Hb_002374_300 Hb_002374_300 Hb_004128_070--Hb_002374_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.950119 0.309807 2.73803 4.57704 0.205588 0.579086
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.77394 4.10085 4.03348 0.970232 6.89489

CAGE analysis