Hb_001399_010

Information

Type -
Description -
Location Contig1399: 20493-26157
Sequence    

Annotation

kegg
ID rcu:RCOM_1316030
description ATP binding protein, putative
nr
ID XP_002518979.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID O82290
description Probable inactive shikimate kinase like 2, chloroplastic OS=Arabidopsis thaliana GN=SKL2 PE=2 SV=2
trembl
ID B9RZ10
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1316030 PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable inactive shikimate kinase like chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10791: 24924-25201 , PASA_asmbl_10792: 20728-26142 , PASA_asmbl_10793: 23679-24032
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001399_010 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_001138_060 0.118039205 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
3 Hb_004128_070 0.118360298 - - PREDICTED: thioredoxin-like protein AAED1, chloroplastic [Jatropha curcas]
4 Hb_001277_100 0.1197977347 - - PREDICTED: 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like isoform X1 [Gossypium raimondii]
5 Hb_001863_020 0.12072848 - - PREDICTED: protein FAM91A1 isoform X1 [Jatropha curcas]
6 Hb_005725_220 0.1214585784 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
7 Hb_000167_050 0.1216538607 - - PREDICTED: uncharacterized protein LOC105641106 [Jatropha curcas]
8 Hb_001946_380 0.1227428413 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
9 Hb_000510_030 0.1271889927 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
10 Hb_000622_290 0.1272850489 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
11 Hb_000525_050 0.1278049936 - - conserved hypothetical protein [Ricinus communis]
12 Hb_012244_010 0.130161532 - - PREDICTED: uncharacterized protein LOC105641034 [Jatropha curcas]
13 Hb_002045_060 0.1311878784 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
14 Hb_001711_120 0.1342890416 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
15 Hb_004644_030 0.1361050205 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
16 Hb_000107_430 0.1369595794 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
17 Hb_000638_160 0.1377667498 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
18 Hb_004257_010 0.1396044464 - - CMP-sialic acid transporter, putative [Ricinus communis]
19 Hb_001663_040 0.1396047777 - - hypothetical protein B456_007G162000 [Gossypium raimondii]
20 Hb_005846_030 0.1405207725 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001399_010 Hb_001399_010 Hb_001138_060 Hb_001138_060 Hb_001399_010--Hb_001138_060 Hb_004128_070 Hb_004128_070 Hb_001399_010--Hb_004128_070 Hb_001277_100 Hb_001277_100 Hb_001399_010--Hb_001277_100 Hb_001863_020 Hb_001863_020 Hb_001399_010--Hb_001863_020 Hb_005725_220 Hb_005725_220 Hb_001399_010--Hb_005725_220 Hb_000167_050 Hb_000167_050 Hb_001399_010--Hb_000167_050 Hb_001723_060 Hb_001723_060 Hb_001138_060--Hb_001723_060 Hb_002762_110 Hb_002762_110 Hb_001138_060--Hb_002762_110 Hb_009778_060 Hb_009778_060 Hb_001138_060--Hb_009778_060 Hb_001195_450 Hb_001195_450 Hb_001138_060--Hb_001195_450 Hb_000318_130 Hb_000318_130 Hb_001138_060--Hb_000318_130 Hb_000077_150 Hb_000077_150 Hb_001138_060--Hb_000077_150 Hb_000032_370 Hb_000032_370 Hb_004128_070--Hb_000032_370 Hb_005846_030 Hb_005846_030 Hb_004128_070--Hb_005846_030 Hb_010422_070 Hb_010422_070 Hb_004128_070--Hb_010422_070 Hb_065525_120 Hb_065525_120 Hb_004128_070--Hb_065525_120 Hb_002374_300 Hb_002374_300 Hb_004128_070--Hb_002374_300 Hb_000107_430 Hb_000107_430 Hb_001277_100--Hb_000107_430 Hb_000811_070 Hb_000811_070 Hb_001277_100--Hb_000811_070 Hb_006907_060 Hb_006907_060 Hb_001277_100--Hb_006907_060 Hb_007192_030 Hb_007192_030 Hb_001277_100--Hb_007192_030 Hb_011671_260 Hb_011671_260 Hb_001277_100--Hb_011671_260 Hb_000086_080 Hb_000086_080 Hb_001277_100--Hb_000086_080 Hb_001863_020--Hb_001138_060 Hb_001946_380 Hb_001946_380 Hb_001863_020--Hb_001946_380 Hb_000525_050 Hb_000525_050 Hb_001863_020--Hb_000525_050 Hb_042202_060 Hb_042202_060 Hb_001863_020--Hb_042202_060 Hb_005167_020 Hb_005167_020 Hb_001863_020--Hb_005167_020 Hb_000164_140 Hb_000164_140 Hb_005725_220--Hb_000164_140 Hb_001124_180 Hb_001124_180 Hb_005725_220--Hb_001124_180 Hb_005725_220--Hb_005846_030 Hb_002078_300 Hb_002078_300 Hb_005725_220--Hb_002078_300 Hb_005489_090 Hb_005489_090 Hb_005725_220--Hb_005489_090 Hb_029920_030 Hb_029920_030 Hb_005725_220--Hb_029920_030 Hb_000638_160 Hb_000638_160 Hb_000167_050--Hb_000638_160 Hb_000394_180 Hb_000394_180 Hb_000167_050--Hb_000394_180 Hb_000723_290 Hb_000723_290 Hb_000167_050--Hb_000723_290 Hb_009780_050 Hb_009780_050 Hb_000167_050--Hb_009780_050 Hb_000167_050--Hb_005846_030 Hb_000176_010 Hb_000176_010 Hb_000167_050--Hb_000176_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.38377 1.09982 6.62772 4.67776 0.905946 2.0188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.71549 4.80589 7.09437 2.85433 10.5867

CAGE analysis