Hb_010422_070

Information

Type -
Description -
Location Contig10422: 89569-95021
Sequence    

Annotation

kegg
ID rcu:RCOM_0409070
description hypothetical protein
nr
ID XP_012081637.1
description PREDICTED: UPF0483 protein CBG03338-like [Jatropha curcas]
swissprot
ID Q9D7E3
description Ovarian cancer-associated gene 2 protein homolog OS=Mus musculus GN=Ovca2 PE=2 SV=1
trembl
ID B9T7U6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0409070 PE=4 SV=1
Gene Ontology
ID GO:0005777
description upf0483 protein agap003155

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01548: 89337-91379 , PASA_asmbl_01550: 91464-92182 , PASA_asmbl_01551: 92252-92359 , PASA_asmbl_01552: 94360-94937
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010422_070 0.0 - - PREDICTED: UPF0483 protein CBG03338-like [Jatropha curcas]
2 Hb_005167_020 0.1234725026 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
3 Hb_004317_030 0.1238396858 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
4 Hb_000032_370 0.1240440695 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
5 Hb_000510_030 0.1259776985 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
6 Hb_004128_070 0.1266929705 - - PREDICTED: thioredoxin-like protein AAED1, chloroplastic [Jatropha curcas]
7 Hb_002045_060 0.1306839851 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
8 Hb_000208_180 0.1329398462 - - PREDICTED: histone H2B-like [Populus euphratica]
9 Hb_000116_360 0.1354358979 - - PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]
10 Hb_000260_620 0.1360644696 - - Thermosensitive gluconokinase, putative [Ricinus communis]
11 Hb_000457_290 0.1388488937 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
12 Hb_042202_060 0.1436528195 - - PREDICTED: probable glycosyltransferase At5g03795 [Jatropha curcas]
13 Hb_001242_080 0.1520775015 - - PREDICTED: UDP-galactose transporter 2-like [Populus euphratica]
14 Hb_001892_070 0.1521852963 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
15 Hb_000139_340 0.1578623594 - - conserved hypothetical protein [Ricinus communis]
16 Hb_019762_050 0.1590307974 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
17 Hb_000392_550 0.1594311201 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000377_150 0.1599751328 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
19 Hb_000428_060 0.1600567293 - - malate dehydrogenase, putative [Ricinus communis]
20 Hb_002876_270 0.1621861634 - - PREDICTED: probable magnesium transporter NIPA4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010422_070 Hb_010422_070 Hb_005167_020 Hb_005167_020 Hb_010422_070--Hb_005167_020 Hb_004317_030 Hb_004317_030 Hb_010422_070--Hb_004317_030 Hb_000032_370 Hb_000032_370 Hb_010422_070--Hb_000032_370 Hb_000510_030 Hb_000510_030 Hb_010422_070--Hb_000510_030 Hb_004128_070 Hb_004128_070 Hb_010422_070--Hb_004128_070 Hb_002045_060 Hb_002045_060 Hb_010422_070--Hb_002045_060 Hb_001863_020 Hb_001863_020 Hb_005167_020--Hb_001863_020 Hb_042202_060 Hb_042202_060 Hb_005167_020--Hb_042202_060 Hb_002876_270 Hb_002876_270 Hb_005167_020--Hb_002876_270 Hb_001399_010 Hb_001399_010 Hb_005167_020--Hb_001399_010 Hb_005167_020--Hb_004128_070 Hb_004317_030--Hb_000032_370 Hb_004317_030--Hb_000510_030 Hb_000392_550 Hb_000392_550 Hb_004317_030--Hb_000392_550 Hb_004317_030--Hb_002045_060 Hb_001369_790 Hb_001369_790 Hb_004317_030--Hb_001369_790 Hb_007894_050 Hb_007894_050 Hb_004317_030--Hb_007894_050 Hb_000032_370--Hb_000392_550 Hb_065525_120 Hb_065525_120 Hb_000032_370--Hb_065525_120 Hb_000032_370--Hb_002045_060 Hb_000032_370--Hb_000510_030 Hb_000428_060 Hb_000428_060 Hb_000032_370--Hb_000428_060 Hb_000510_030--Hb_000392_550 Hb_000510_030--Hb_001369_790 Hb_001711_120 Hb_001711_120 Hb_000510_030--Hb_001711_120 Hb_004440_060 Hb_004440_060 Hb_000510_030--Hb_004440_060 Hb_004128_070--Hb_000032_370 Hb_004128_070--Hb_001399_010 Hb_005846_030 Hb_005846_030 Hb_004128_070--Hb_005846_030 Hb_004128_070--Hb_065525_120 Hb_002374_300 Hb_002374_300 Hb_004128_070--Hb_002374_300 Hb_005276_040 Hb_005276_040 Hb_002045_060--Hb_005276_040 Hb_001892_070 Hb_001892_070 Hb_002045_060--Hb_001892_070 Hb_004123_020 Hb_004123_020 Hb_002045_060--Hb_004123_020 Hb_002045_060--Hb_000428_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.496604 0.552675 3.36028 3.94007 0.441944 0.436513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.29276 5.20242 4.69181 4.549 7.57422

CAGE analysis