Hb_005167_020

Information

Type -
Description -
Location Contig5167: 18623-21574
Sequence    

Annotation

kegg
ID vvi:104878039
description uncharacterized LOC104878039
nr
ID XP_010646031.1
description PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID W5DL39
description Uncharacterized protein OS=Triticum aestivum PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46536: 19107-19404
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005167_020 0.0 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
2 Hb_010422_070 0.1234725026 - - PREDICTED: UPF0483 protein CBG03338-like [Jatropha curcas]
3 Hb_001863_020 0.1401736899 - - PREDICTED: protein FAM91A1 isoform X1 [Jatropha curcas]
4 Hb_042202_060 0.1423552221 - - PREDICTED: probable glycosyltransferase At5g03795 [Jatropha curcas]
5 Hb_002876_270 0.1609306456 - - PREDICTED: probable magnesium transporter NIPA4 isoform X1 [Jatropha curcas]
6 Hb_001399_010 0.1635375219 - - ATP binding protein, putative [Ricinus communis]
7 Hb_004128_070 0.1659765314 - - PREDICTED: thioredoxin-like protein AAED1, chloroplastic [Jatropha curcas]
8 Hb_020437_020 0.1715504836 - - hypothetical protein POPTR_0001s01410g, partial [Populus trichocarpa]
9 Hb_001138_060 0.1725131112 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
10 Hb_000789_120 0.1745990695 - - PREDICTED: derlin-1 isoform X1 [Jatropha curcas]
11 Hb_002045_060 0.1801649502 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
12 Hb_139848_010 0.1802377188 - - PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic [Populus euphratica]
13 Hb_000510_030 0.1827811421 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
14 Hb_000058_080 0.1836167259 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
15 Hb_006816_470 0.1838770818 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
16 Hb_001946_380 0.1852007727 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
17 Hb_069696_010 0.1862753957 - - hypothetical protein POPTR_0003s21190g [Populus trichocarpa]
18 Hb_001059_150 0.1904161857 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
19 Hb_000890_080 0.1939087778 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
20 Hb_008725_170 0.193933098 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Populus euphratica]

Gene co-expression network

sample Hb_005167_020 Hb_005167_020 Hb_010422_070 Hb_010422_070 Hb_005167_020--Hb_010422_070 Hb_001863_020 Hb_001863_020 Hb_005167_020--Hb_001863_020 Hb_042202_060 Hb_042202_060 Hb_005167_020--Hb_042202_060 Hb_002876_270 Hb_002876_270 Hb_005167_020--Hb_002876_270 Hb_001399_010 Hb_001399_010 Hb_005167_020--Hb_001399_010 Hb_004128_070 Hb_004128_070 Hb_005167_020--Hb_004128_070 Hb_004317_030 Hb_004317_030 Hb_010422_070--Hb_004317_030 Hb_000032_370 Hb_000032_370 Hb_010422_070--Hb_000032_370 Hb_000510_030 Hb_000510_030 Hb_010422_070--Hb_000510_030 Hb_010422_070--Hb_004128_070 Hb_002045_060 Hb_002045_060 Hb_010422_070--Hb_002045_060 Hb_001138_060 Hb_001138_060 Hb_001863_020--Hb_001138_060 Hb_001946_380 Hb_001946_380 Hb_001863_020--Hb_001946_380 Hb_001863_020--Hb_001399_010 Hb_000525_050 Hb_000525_050 Hb_001863_020--Hb_000525_050 Hb_001863_020--Hb_042202_060 Hb_042202_060--Hb_002876_270 Hb_006816_470 Hb_006816_470 Hb_042202_060--Hb_006816_470 Hb_042202_060--Hb_001138_060 Hb_042202_060--Hb_010422_070 Hb_000548_070 Hb_000548_070 Hb_002876_270--Hb_000548_070 Hb_006277_010 Hb_006277_010 Hb_002876_270--Hb_006277_010 Hb_002876_270--Hb_006816_470 Hb_003044_080 Hb_003044_080 Hb_002876_270--Hb_003044_080 Hb_021943_090 Hb_021943_090 Hb_002876_270--Hb_021943_090 Hb_006059_010 Hb_006059_010 Hb_002876_270--Hb_006059_010 Hb_001399_010--Hb_001138_060 Hb_001399_010--Hb_004128_070 Hb_001277_100 Hb_001277_100 Hb_001399_010--Hb_001277_100 Hb_005725_220 Hb_005725_220 Hb_001399_010--Hb_005725_220 Hb_000167_050 Hb_000167_050 Hb_001399_010--Hb_000167_050 Hb_004128_070--Hb_000032_370 Hb_005846_030 Hb_005846_030 Hb_004128_070--Hb_005846_030 Hb_065525_120 Hb_065525_120 Hb_004128_070--Hb_065525_120 Hb_002374_300 Hb_002374_300 Hb_004128_070--Hb_002374_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0485746 0.0286643 0.256473 0.233643 0.0622994 0.0105255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.147877 0.232701 0.44029 0.277956 0.613229

CAGE analysis