Hb_042202_060

Information

Type -
Description -
Location Contig42202: 53237-55248
Sequence    

Annotation

kegg
ID rcu:RCOM_1439040
description catalytic, putative
nr
ID XP_012088658.1
description PREDICTED: probable glycosyltransferase At5g03795 [Jatropha curcas]
swissprot
ID Q9FFN2
description Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2
trembl
ID A0A067JTC4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23053 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41741: 21463-52456 , PASA_asmbl_41743: 53741-55253
cDNA
(Sanger)
(ID:Location)		 010_J06.ab1: 21465-52348 , 036_C03.ab1: 21465-52365

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042202_060 0.0 - - PREDICTED: probable glycosyltransferase At5g03795 [Jatropha curcas]
2 Hb_002876_270 0.1328919571 - - PREDICTED: probable magnesium transporter NIPA4 isoform X1 [Jatropha curcas]
3 Hb_001863_020 0.1363893814 - - PREDICTED: protein FAM91A1 isoform X1 [Jatropha curcas]
4 Hb_006816_470 0.1373106547 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
5 Hb_001138_060 0.1420301272 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
6 Hb_005167_020 0.1423552221 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
7 Hb_010422_070 0.1436528195 - - PREDICTED: UPF0483 protein CBG03338-like [Jatropha curcas]
8 Hb_001399_010 0.1490177874 - - ATP binding protein, putative [Ricinus communis]
9 Hb_003453_050 0.1494438467 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
10 Hb_008725_170 0.1521496531 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Populus euphratica]
11 Hb_007741_100 0.1529300082 transcription factor TF Family: GRAS PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6 [Jatropha curcas]
12 Hb_001946_380 0.154059906 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
13 Hb_000377_150 0.1566348458 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
14 Hb_001214_180 0.158145811 - - -
15 Hb_000365_370 0.1600683612 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000622_290 0.1604734382 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
17 Hb_000140_270 0.1609014035 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
18 Hb_000457_290 0.1634312436 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
19 Hb_171718_010 0.1651472639 - - PREDICTED: disease resistance protein At4g27190-like [Eucalyptus grandis]
20 Hb_001892_070 0.167071266 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]

Gene co-expression network

sample Hb_042202_060 Hb_042202_060 Hb_002876_270 Hb_002876_270 Hb_042202_060--Hb_002876_270 Hb_001863_020 Hb_001863_020 Hb_042202_060--Hb_001863_020 Hb_006816_470 Hb_006816_470 Hb_042202_060--Hb_006816_470 Hb_001138_060 Hb_001138_060 Hb_042202_060--Hb_001138_060 Hb_005167_020 Hb_005167_020 Hb_042202_060--Hb_005167_020 Hb_010422_070 Hb_010422_070 Hb_042202_060--Hb_010422_070 Hb_000548_070 Hb_000548_070 Hb_002876_270--Hb_000548_070 Hb_006277_010 Hb_006277_010 Hb_002876_270--Hb_006277_010 Hb_002876_270--Hb_006816_470 Hb_003044_080 Hb_003044_080 Hb_002876_270--Hb_003044_080 Hb_021943_090 Hb_021943_090 Hb_002876_270--Hb_021943_090 Hb_006059_010 Hb_006059_010 Hb_002876_270--Hb_006059_010 Hb_001863_020--Hb_001138_060 Hb_001946_380 Hb_001946_380 Hb_001863_020--Hb_001946_380 Hb_001399_010 Hb_001399_010 Hb_001863_020--Hb_001399_010 Hb_000525_050 Hb_000525_050 Hb_001863_020--Hb_000525_050 Hb_001863_020--Hb_005167_020 Hb_008725_170 Hb_008725_170 Hb_006816_470--Hb_008725_170 Hb_008176_010 Hb_008176_010 Hb_006816_470--Hb_008176_010 Hb_000019_200 Hb_000019_200 Hb_006816_470--Hb_000019_200 Hb_006816_470--Hb_006277_010 Hb_000406_130 Hb_000406_130 Hb_006816_470--Hb_000406_130 Hb_001723_060 Hb_001723_060 Hb_001138_060--Hb_001723_060 Hb_002762_110 Hb_002762_110 Hb_001138_060--Hb_002762_110 Hb_009778_060 Hb_009778_060 Hb_001138_060--Hb_009778_060 Hb_001195_450 Hb_001195_450 Hb_001138_060--Hb_001195_450 Hb_000318_130 Hb_000318_130 Hb_001138_060--Hb_000318_130 Hb_000077_150 Hb_000077_150 Hb_001138_060--Hb_000077_150 Hb_005167_020--Hb_010422_070 Hb_005167_020--Hb_002876_270 Hb_005167_020--Hb_001399_010 Hb_004128_070 Hb_004128_070 Hb_005167_020--Hb_004128_070 Hb_004317_030 Hb_004317_030 Hb_010422_070--Hb_004317_030 Hb_000032_370 Hb_000032_370 Hb_010422_070--Hb_000032_370 Hb_000510_030 Hb_000510_030 Hb_010422_070--Hb_000510_030 Hb_010422_070--Hb_004128_070 Hb_002045_060 Hb_002045_060 Hb_010422_070--Hb_002045_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.323767 0.493272 0.872021 1.43902 0.128317 0.260114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.598961 1.50187 2.36345 1.10756 2.75246

CAGE analysis