Hb_008725_170

Information

Type transcription factor
Description TF Family: FAR1
Location Contig8725: 103816-107033
Sequence    

Annotation

kegg
ID pop:POPTR_0002s20030g
description POPTRDRAFT_409270; hypothetical protein
nr
ID XP_011042203.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Populus euphratica]
swissprot
ID Q9SY66
description Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana GN=FRS11 PE=2 SV=1
trembl
ID B9GSF4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s20030g PE=4 SV=2
Gene Ontology
ID GO:0003676
description protein far1-related sequence 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61194: 104626-106443 , PASA_asmbl_61195: 105810-106443 , PASA_asmbl_61196: 106649-107839 , PASA_asmbl_61197: 107503-107690
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008725_170 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Populus euphratica]
2 Hb_006816_470 0.08640415 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
3 Hb_000020_120 0.0928706848 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
4 Hb_000406_130 0.1071526905 - - vesicle-associated membrane protein, putative [Ricinus communis]
5 Hb_007416_060 0.1118481558 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]
6 Hb_000479_140 0.1185451583 - - TPA: hypothetical protein ZEAMMB73_881803, partial [Zea mays]
7 Hb_003086_080 0.1192063415 - - PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]
8 Hb_008176_010 0.1198095156 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20090 [Jatropha curcas]
9 Hb_000165_160 0.1222999402 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
10 Hb_000856_150 0.1238593379 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
11 Hb_008566_030 0.124240549 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
12 Hb_010344_050 0.1249058567 - - Adagio 1 -like protein [Gossypium arboreum]
13 Hb_000027_260 0.1249285198 - - PREDICTED: chaperone protein dnaJ 15 [Jatropha curcas]
14 Hb_011671_450 0.1296447238 - - -
15 Hb_011671_460 0.1313570325 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
16 Hb_000019_200 0.1314723898 - - PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
17 Hb_005601_040 0.1341750709 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
18 Hb_006162_010 0.1364199966 - - CAZy families GH95 protein, partial [uncultured Chitinophaga sp.]
19 Hb_001629_030 0.1369930699 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
20 Hb_000471_110 0.1369967724 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_008725_170 Hb_008725_170 Hb_006816_470 Hb_006816_470 Hb_008725_170--Hb_006816_470 Hb_000020_120 Hb_000020_120 Hb_008725_170--Hb_000020_120 Hb_000406_130 Hb_000406_130 Hb_008725_170--Hb_000406_130 Hb_007416_060 Hb_007416_060 Hb_008725_170--Hb_007416_060 Hb_000479_140 Hb_000479_140 Hb_008725_170--Hb_000479_140 Hb_003086_080 Hb_003086_080 Hb_008725_170--Hb_003086_080 Hb_002876_270 Hb_002876_270 Hb_006816_470--Hb_002876_270 Hb_008176_010 Hb_008176_010 Hb_006816_470--Hb_008176_010 Hb_000019_200 Hb_000019_200 Hb_006816_470--Hb_000019_200 Hb_006277_010 Hb_006277_010 Hb_006816_470--Hb_006277_010 Hb_006816_470--Hb_000406_130 Hb_000020_120--Hb_000479_140 Hb_042202_030 Hb_042202_030 Hb_000020_120--Hb_042202_030 Hb_000020_120--Hb_000406_130 Hb_000020_120--Hb_007416_060 Hb_003376_250 Hb_003376_250 Hb_000020_120--Hb_003376_250 Hb_000471_110 Hb_000471_110 Hb_000406_130--Hb_000471_110 Hb_001352_020 Hb_001352_020 Hb_000406_130--Hb_001352_020 Hb_000406_130--Hb_000479_140 Hb_000406_130--Hb_008176_010 Hb_000116_260 Hb_000116_260 Hb_000406_130--Hb_000116_260 Hb_000406_130--Hb_003376_250 Hb_005488_200 Hb_005488_200 Hb_007416_060--Hb_005488_200 Hb_007416_060--Hb_000116_260 Hb_000783_020 Hb_000783_020 Hb_007416_060--Hb_000783_020 Hb_001489_080 Hb_001489_080 Hb_007416_060--Hb_001489_080 Hb_007416_060--Hb_003376_250 Hb_000436_130 Hb_000436_130 Hb_007416_060--Hb_000436_130 Hb_000479_140--Hb_000471_110 Hb_001242_130 Hb_001242_130 Hb_000479_140--Hb_001242_130 Hb_010344_050 Hb_010344_050 Hb_000479_140--Hb_010344_050 Hb_000497_300 Hb_000497_300 Hb_000479_140--Hb_000497_300 Hb_008566_030 Hb_008566_030 Hb_003086_080--Hb_008566_030 Hb_000337_050 Hb_000337_050 Hb_003086_080--Hb_000337_050 Hb_005144_050 Hb_005144_050 Hb_003086_080--Hb_005144_050 Hb_001307_030 Hb_001307_030 Hb_003086_080--Hb_001307_030 Hb_024128_020 Hb_024128_020 Hb_003086_080--Hb_024128_020 Hb_000085_400 Hb_000085_400 Hb_003086_080--Hb_000085_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.02717 2.30073 4.74838 6.65607 3.02673 3.80794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.74293 6.79635 16.4272 7.44886 12.4109

CAGE analysis