Hb_042202_030

Information

Type -
Description -
Location Contig42202: 21542-22717
Sequence    

Annotation

kegg
ID tcc:TCM_003145
description hypothetical protein
nr
ID XP_012088661.1
description PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JHB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23055 PE=4 SV=1
Gene Ontology
ID GO:0009507
description leucine--trna ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41741: 21463-52456
cDNA
(Sanger)
(ID:Location)		 010_J06.ab1: 21465-52348 , 036_C03.ab1: 21465-52365

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042202_030 0.0 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
2 Hb_007747_210 0.0888501586 - - unnamed protein product [Vitis vinifera]
3 Hb_000020_120 0.0890374704 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
4 Hb_003688_150 0.1108427465 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
5 Hb_002799_070 0.116736448 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
6 Hb_079312_010 0.1192742334 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000116_430 0.1193291867 - - PREDICTED: mitochondrial phosphate carrier protein 1, mitochondrial-like isoform X1 [Jatropha curcas]
8 Hb_001195_200 0.1194199442 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
9 Hb_000159_130 0.1200590066 - - RNA binding protein, putative [Ricinus communis]
10 Hb_000327_180 0.1223041404 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
11 Hb_001910_010 0.1232083085 - - Dual specificity protein phosphatase, putative [Ricinus communis]
12 Hb_003376_250 0.1234422945 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
13 Hb_000676_150 0.1239285156 - - 50S ribosomal protein L7/L12, putative [Ricinus communis]
14 Hb_001486_180 0.1263088999 - - hypothetical protein B456_007G260200 [Gossypium raimondii]
15 Hb_001414_030 0.1267463238 - - PREDICTED: aspartate-semialdehyde dehydrogenase [Jatropha curcas]
16 Hb_000982_080 0.1270910446 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
17 Hb_000631_070 0.1277906379 transcription factor TF Family: C2H2 PREDICTED: histone deacetylase 5 [Jatropha curcas]
18 Hb_005183_120 0.1291682367 - - protein translocase, putative [Ricinus communis]
19 Hb_009113_070 0.1312548336 - - hypothetical protein POPTR_0010s07510g [Populus trichocarpa]
20 Hb_129910_010 0.132012981 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1X [Populus euphratica]

Gene co-expression network

sample Hb_042202_030 Hb_042202_030 Hb_007747_210 Hb_007747_210 Hb_042202_030--Hb_007747_210 Hb_000020_120 Hb_000020_120 Hb_042202_030--Hb_000020_120 Hb_003688_150 Hb_003688_150 Hb_042202_030--Hb_003688_150 Hb_002799_070 Hb_002799_070 Hb_042202_030--Hb_002799_070 Hb_079312_010 Hb_079312_010 Hb_042202_030--Hb_079312_010 Hb_000116_430 Hb_000116_430 Hb_042202_030--Hb_000116_430 Hb_007747_210--Hb_079312_010 Hb_005237_050 Hb_005237_050 Hb_007747_210--Hb_005237_050 Hb_009455_020 Hb_009455_020 Hb_007747_210--Hb_009455_020 Hb_000215_070 Hb_000215_070 Hb_007747_210--Hb_000215_070 Hb_003020_220 Hb_003020_220 Hb_007747_210--Hb_003020_220 Hb_000479_140 Hb_000479_140 Hb_000020_120--Hb_000479_140 Hb_000406_130 Hb_000406_130 Hb_000020_120--Hb_000406_130 Hb_007416_060 Hb_007416_060 Hb_000020_120--Hb_007416_060 Hb_008725_170 Hb_008725_170 Hb_000020_120--Hb_008725_170 Hb_003376_250 Hb_003376_250 Hb_000020_120--Hb_003376_250 Hb_000783_020 Hb_000783_020 Hb_003688_150--Hb_000783_020 Hb_000120_460 Hb_000120_460 Hb_003688_150--Hb_000120_460 Hb_001619_070 Hb_001619_070 Hb_003688_150--Hb_001619_070 Hb_001318_270 Hb_001318_270 Hb_003688_150--Hb_001318_270 Hb_103118_010 Hb_103118_010 Hb_003688_150--Hb_103118_010 Hb_086639_040 Hb_086639_040 Hb_003688_150--Hb_086639_040 Hb_000327_180 Hb_000327_180 Hb_002799_070--Hb_000327_180 Hb_000165_160 Hb_000165_160 Hb_002799_070--Hb_000165_160 Hb_001489_080 Hb_001489_080 Hb_002799_070--Hb_001489_080 Hb_001541_120 Hb_001541_120 Hb_002799_070--Hb_001541_120 Hb_006420_080 Hb_006420_080 Hb_002799_070--Hb_006420_080 Hb_001123_040 Hb_001123_040 Hb_002799_070--Hb_001123_040 Hb_009803_050 Hb_009803_050 Hb_079312_010--Hb_009803_050 Hb_012423_030 Hb_012423_030 Hb_079312_010--Hb_012423_030 Hb_079312_010--Hb_003020_220 Hb_079312_010--Hb_003688_150 Hb_003768_030 Hb_003768_030 Hb_079312_010--Hb_003768_030 Hb_000603_080 Hb_000603_080 Hb_079312_010--Hb_000603_080 Hb_029888_010 Hb_029888_010 Hb_000116_430--Hb_029888_010 Hb_001414_030 Hb_001414_030 Hb_000116_430--Hb_001414_030 Hb_000116_430--Hb_000020_120 Hb_001511_070 Hb_001511_070 Hb_000116_430--Hb_001511_070 Hb_000856_150 Hb_000856_150 Hb_000116_430--Hb_000856_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.05854 8.72433 7.93869 10.0976 10.6845 12.5283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.4504 23.6658 33.116 32.5027 31.5386

CAGE analysis