Hb_001619_070

Information

Type -
Description -
Location Contig1619: 70607-73978
Sequence    

Annotation

kegg
ID cmo:103503585
description uncharacterized LOC103503585
nr
ID XP_008466033.1
description PREDICTED: uncharacterized protein LOC103503585 [Cucumis melo]
swissprot
ID -
description -
trembl
ID A0A0A0LE77
description Uncharacterized protein OS=Cucumis sativus GN=Csa_3G895860 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein spinster

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14539: 73583-73695
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001619_070 0.0 - - PREDICTED: uncharacterized protein LOC103503585 [Cucumis melo]
2 Hb_001009_170 0.0718824538 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
3 Hb_127552_030 0.0810907032 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
4 Hb_003688_150 0.0842975262 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
5 Hb_004607_050 0.0867405483 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
6 Hb_001959_210 0.0917187695 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
7 Hb_000976_170 0.0928556397 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
8 Hb_005183_120 0.0930832885 - - protein translocase, putative [Ricinus communis]
9 Hb_155159_030 0.0952731994 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
10 Hb_015175_020 0.0956759231 - - hypothetical protein JCGZ_14452 [Jatropha curcas]
11 Hb_172932_010 0.0963544876 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000999_050 0.09988411 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
13 Hb_004218_110 0.100850712 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
14 Hb_002685_210 0.1015026391 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
15 Hb_005490_030 0.101645112 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
16 Hb_000783_020 0.1017378693 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
17 Hb_000120_460 0.1023523232 - - PREDICTED: thioredoxin reductase NTRB-like [Jatropha curcas]
18 Hb_000977_110 0.1036432081 - - PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial [Jatropha curcas]
19 Hb_000023_090 0.1044915541 - - mak, putative [Ricinus communis]
20 Hb_011671_180 0.1046583776 - - PREDICTED: probable quinone oxidoreductase [Jatropha curcas]

Gene co-expression network

sample Hb_001619_070 Hb_001619_070 Hb_001009_170 Hb_001009_170 Hb_001619_070--Hb_001009_170 Hb_127552_030 Hb_127552_030 Hb_001619_070--Hb_127552_030 Hb_003688_150 Hb_003688_150 Hb_001619_070--Hb_003688_150 Hb_004607_050 Hb_004607_050 Hb_001619_070--Hb_004607_050 Hb_001959_210 Hb_001959_210 Hb_001619_070--Hb_001959_210 Hb_000976_170 Hb_000976_170 Hb_001619_070--Hb_000976_170 Hb_005490_030 Hb_005490_030 Hb_001009_170--Hb_005490_030 Hb_004920_120 Hb_004920_120 Hb_001009_170--Hb_004920_120 Hb_001009_170--Hb_001959_210 Hb_011671_180 Hb_011671_180 Hb_001009_170--Hb_011671_180 Hb_007044_140 Hb_007044_140 Hb_001009_170--Hb_007044_140 Hb_155159_030 Hb_155159_030 Hb_127552_030--Hb_155159_030 Hb_015934_070 Hb_015934_070 Hb_127552_030--Hb_015934_070 Hb_025240_040 Hb_025240_040 Hb_127552_030--Hb_025240_040 Hb_127552_030--Hb_000976_170 Hb_105123_010 Hb_105123_010 Hb_127552_030--Hb_105123_010 Hb_108350_010 Hb_108350_010 Hb_127552_030--Hb_108350_010 Hb_000783_020 Hb_000783_020 Hb_003688_150--Hb_000783_020 Hb_000120_460 Hb_000120_460 Hb_003688_150--Hb_000120_460 Hb_001318_270 Hb_001318_270 Hb_003688_150--Hb_001318_270 Hb_103118_010 Hb_103118_010 Hb_003688_150--Hb_103118_010 Hb_086639_040 Hb_086639_040 Hb_003688_150--Hb_086639_040 Hb_000999_050 Hb_000999_050 Hb_004607_050--Hb_000999_050 Hb_000866_170 Hb_000866_170 Hb_004607_050--Hb_000866_170 Hb_004607_050--Hb_005490_030 Hb_002942_100 Hb_002942_100 Hb_004607_050--Hb_002942_100 Hb_000185_040 Hb_000185_040 Hb_004607_050--Hb_000185_040 Hb_006938_080 Hb_006938_080 Hb_004607_050--Hb_006938_080 Hb_000483_200 Hb_000483_200 Hb_001959_210--Hb_000483_200 Hb_006400_060 Hb_006400_060 Hb_001959_210--Hb_006400_060 Hb_001959_210--Hb_127552_030 Hb_006400_030 Hb_006400_030 Hb_001959_210--Hb_006400_030 Hb_024185_020 Hb_024185_020 Hb_001959_210--Hb_024185_020 Hb_000976_170--Hb_000120_460 Hb_000976_170--Hb_108350_010 Hb_002183_090 Hb_002183_090 Hb_000976_170--Hb_002183_090 Hb_000085_050 Hb_000085_050 Hb_000976_170--Hb_000085_050 Hb_000976_170--Hb_025240_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.17747 2.38191 1.62383 2.92647 3.62989 5.39629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.47219 6.00709 8.55329 6.75529 5.38973

CAGE analysis