Hb_000856_150

Information

Type -
Description -
Location Contig856: 119203-121824
Sequence    

Annotation

kegg
ID rcu:RCOM_1513340
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012080191.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
swissprot
ID Q8GYP6
description Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana GN=At1g18900 PE=2 SV=1
trembl
ID A0A067K4Z8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11568 PE=4 SV=1
Gene Ontology
ID GO:0008568
description pentatricopeptide repeat-containing protein at1g18900-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_150 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
2 Hb_008725_170 0.1238593379 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Populus euphratica]
3 Hb_000020_120 0.130424406 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
4 Hb_001511_070 0.1389360026 transcription factor TF Family: G2-like hypothetical protein POPTR_0010s19310g [Populus trichocarpa]
5 Hb_002205_130 0.1394020304 - - hypothetical protein B456_008G176100 [Gossypium raimondii]
6 Hb_000116_430 0.1428206143 - - PREDICTED: mitochondrial phosphate carrier protein 1, mitochondrial-like isoform X1 [Jatropha curcas]
7 Hb_000076_020 0.1449795786 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
8 Hb_000283_080 0.1505516265 - - -
9 Hb_029888_010 0.1556094411 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Nicotiana tomentosiformis]
10 Hb_000165_160 0.1591609927 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
11 Hb_002078_440 0.162594444 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
12 Hb_001433_130 0.1629265614 - - PREDICTED: uncharacterized protein LOC105647468 isoform X1 [Jatropha curcas]
13 Hb_011671_460 0.1634732493 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
14 Hb_000334_150 0.1641175806 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002307_170 0.165845712 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
16 Hb_000367_260 0.1694694807 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
17 Hb_000479_140 0.1700121099 - - TPA: hypothetical protein ZEAMMB73_881803, partial [Zea mays]
18 Hb_042202_030 0.1702938603 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
19 Hb_000676_150 0.1709069448 - - 50S ribosomal protein L7/L12, putative [Ricinus communis]
20 Hb_031910_020 0.1712830146 - - PREDICTED: exocyst complex component SEC15A [Jatropha curcas]

Gene co-expression network

sample Hb_000856_150 Hb_000856_150 Hb_008725_170 Hb_008725_170 Hb_000856_150--Hb_008725_170 Hb_000020_120 Hb_000020_120 Hb_000856_150--Hb_000020_120 Hb_001511_070 Hb_001511_070 Hb_000856_150--Hb_001511_070 Hb_002205_130 Hb_002205_130 Hb_000856_150--Hb_002205_130 Hb_000116_430 Hb_000116_430 Hb_000856_150--Hb_000116_430 Hb_000076_020 Hb_000076_020 Hb_000856_150--Hb_000076_020 Hb_006816_470 Hb_006816_470 Hb_008725_170--Hb_006816_470 Hb_008725_170--Hb_000020_120 Hb_000406_130 Hb_000406_130 Hb_008725_170--Hb_000406_130 Hb_007416_060 Hb_007416_060 Hb_008725_170--Hb_007416_060 Hb_000479_140 Hb_000479_140 Hb_008725_170--Hb_000479_140 Hb_003086_080 Hb_003086_080 Hb_008725_170--Hb_003086_080 Hb_000020_120--Hb_000479_140 Hb_042202_030 Hb_042202_030 Hb_000020_120--Hb_042202_030 Hb_000020_120--Hb_000406_130 Hb_000020_120--Hb_007416_060 Hb_003376_250 Hb_003376_250 Hb_000020_120--Hb_003376_250 Hb_000283_080 Hb_000283_080 Hb_001511_070--Hb_000283_080 Hb_005188_020 Hb_005188_020 Hb_001511_070--Hb_005188_020 Hb_001511_070--Hb_002205_130 Hb_003020_220 Hb_003020_220 Hb_001511_070--Hb_003020_220 Hb_029888_010 Hb_029888_010 Hb_001511_070--Hb_029888_010 Hb_011030_020 Hb_011030_020 Hb_002205_130--Hb_011030_020 Hb_012799_100 Hb_012799_100 Hb_002205_130--Hb_012799_100 Hb_005162_070 Hb_005162_070 Hb_002205_130--Hb_005162_070 Hb_002284_200 Hb_002284_200 Hb_002205_130--Hb_002284_200 Hb_019263_020 Hb_019263_020 Hb_002205_130--Hb_019263_020 Hb_002027_040 Hb_002027_040 Hb_002205_130--Hb_002027_040 Hb_000116_430--Hb_029888_010 Hb_000116_430--Hb_042202_030 Hb_001414_030 Hb_001414_030 Hb_000116_430--Hb_001414_030 Hb_000116_430--Hb_000020_120 Hb_000116_430--Hb_001511_070 Hb_000076_020--Hb_000116_430 Hb_000076_020--Hb_029888_010 Hb_000076_020--Hb_001511_070 Hb_000076_020--Hb_000020_120 Hb_011609_090 Hb_011609_090 Hb_000076_020--Hb_011609_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.76769 1.18356 2.79661 1.58756 0.905461 1.97972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.03709 4.60811 11.6403 5.07899 5.73151

CAGE analysis