Hb_000116_430

Information

Type -
Description -
Location Contig116: 367553-371737
Sequence    

Annotation

kegg
ID pop:POPTR_0005s10170g
description POPTRDRAFT_760334; hypothetical protein
nr
ID XP_012065430.1
description PREDICTED: mitochondrial phosphate carrier protein 1, mitochondrial-like isoform X1 [Jatropha curcas]
swissprot
ID Q7DNC3
description Mitochondrial phosphate carrier protein 1, mitochondrial OS=Arabidopsis thaliana GN=MPT1 PE=2 SV=1
trembl
ID B9H646
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s10170g PE=3 SV=2
Gene Ontology
ID GO:0016021
description mitochondrial phosphate carrier protein mitochondrial-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04882: 368890-369098
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_430 0.0 - - PREDICTED: mitochondrial phosphate carrier protein 1, mitochondrial-like isoform X1 [Jatropha curcas]
2 Hb_029888_010 0.1103857939 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Nicotiana tomentosiformis]
3 Hb_042202_030 0.1193291867 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
4 Hb_001414_030 0.1384678296 - - PREDICTED: aspartate-semialdehyde dehydrogenase [Jatropha curcas]
5 Hb_000020_120 0.1388180807 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
6 Hb_001511_070 0.1420787406 transcription factor TF Family: G2-like hypothetical protein POPTR_0010s19310g [Populus trichocarpa]
7 Hb_000856_150 0.1428206143 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
8 Hb_000367_190 0.1448239715 - - hypothetical protein RCOM_1470550 [Ricinus communis]
9 Hb_002835_100 0.1456716693 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
10 Hb_000076_020 0.1477185302 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
11 Hb_070256_010 0.1506089532 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105630457 [Jatropha curcas]
12 Hb_001357_300 0.1548545477 - - PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_003688_150 0.1564842567 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
14 Hb_000200_290 0.1565313874 - - PREDICTED: elongator complex protein 2 isoform X1 [Jatropha curcas]
15 Hb_007747_210 0.15677516 - - unnamed protein product [Vitis vinifera]
16 Hb_005183_120 0.1570874011 - - protein translocase, putative [Ricinus communis]
17 Hb_002799_070 0.1575610646 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
18 Hb_000676_150 0.1575758435 - - 50S ribosomal protein L7/L12, putative [Ricinus communis]
19 Hb_011534_030 0.1576632005 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
20 Hb_000283_080 0.1585303419 - - -

Gene co-expression network

sample Hb_000116_430 Hb_000116_430 Hb_029888_010 Hb_029888_010 Hb_000116_430--Hb_029888_010 Hb_042202_030 Hb_042202_030 Hb_000116_430--Hb_042202_030 Hb_001414_030 Hb_001414_030 Hb_000116_430--Hb_001414_030 Hb_000020_120 Hb_000020_120 Hb_000116_430--Hb_000020_120 Hb_001511_070 Hb_001511_070 Hb_000116_430--Hb_001511_070 Hb_000856_150 Hb_000856_150 Hb_000116_430--Hb_000856_150 Hb_130279_010 Hb_130279_010 Hb_029888_010--Hb_130279_010 Hb_029888_010--Hb_001511_070 Hb_009455_020 Hb_009455_020 Hb_029888_010--Hb_009455_020 Hb_070256_010 Hb_070256_010 Hb_029888_010--Hb_070256_010 Hb_029888_010--Hb_000856_150 Hb_007747_210 Hb_007747_210 Hb_042202_030--Hb_007747_210 Hb_042202_030--Hb_000020_120 Hb_003688_150 Hb_003688_150 Hb_042202_030--Hb_003688_150 Hb_002799_070 Hb_002799_070 Hb_042202_030--Hb_002799_070 Hb_079312_010 Hb_079312_010 Hb_042202_030--Hb_079312_010 Hb_000329_760 Hb_000329_760 Hb_001414_030--Hb_000329_760 Hb_016522_010 Hb_016522_010 Hb_001414_030--Hb_016522_010 Hb_000982_080 Hb_000982_080 Hb_001414_030--Hb_000982_080 Hb_034380_020 Hb_034380_020 Hb_001414_030--Hb_034380_020 Hb_001357_300 Hb_001357_300 Hb_001414_030--Hb_001357_300 Hb_011942_090 Hb_011942_090 Hb_001414_030--Hb_011942_090 Hb_000479_140 Hb_000479_140 Hb_000020_120--Hb_000479_140 Hb_000406_130 Hb_000406_130 Hb_000020_120--Hb_000406_130 Hb_007416_060 Hb_007416_060 Hb_000020_120--Hb_007416_060 Hb_008725_170 Hb_008725_170 Hb_000020_120--Hb_008725_170 Hb_003376_250 Hb_003376_250 Hb_000020_120--Hb_003376_250 Hb_000283_080 Hb_000283_080 Hb_001511_070--Hb_000283_080 Hb_005188_020 Hb_005188_020 Hb_001511_070--Hb_005188_020 Hb_002205_130 Hb_002205_130 Hb_001511_070--Hb_002205_130 Hb_003020_220 Hb_003020_220 Hb_001511_070--Hb_003020_220 Hb_001511_070--Hb_000856_150 Hb_000856_150--Hb_008725_170 Hb_000856_150--Hb_000020_120 Hb_000856_150--Hb_002205_130 Hb_000076_020 Hb_000076_020 Hb_000856_150--Hb_000076_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.495436 0.449863 0.442651 0.161948 0.194578 0.629691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.998105 1.08713 1.68919 1.41417 1.06512

CAGE analysis