Hb_070256_010

Information

Type transcription factor
Description TF Family: mTERF
Location Contig70256: 3-512
Sequence    

Annotation

kegg
ID rcu:RCOM_0837220
description hypothetical protein
nr
ID XP_012067663.1
description PREDICTED: uncharacterized protein LOC105630457 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L9S5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15622 PE=4 SV=1
Gene Ontology
ID GO:0005739
description transcription termination factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_070256_010 0.0 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105630457 [Jatropha curcas]
2 Hb_003688_150 0.0915409408 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
3 Hb_003020_220 0.0921020945 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
4 Hb_000603_110 0.0921177443 - - copper transporter, putative [Ricinus communis]
5 Hb_009382_010 0.0922238644 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
6 Hb_002006_030 0.0928612527 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER [Jatropha curcas]
7 Hb_002660_010 0.0953893697 transcription factor TF Family: ARF PREDICTED: auxin response factor 18-like [Jatropha curcas]
8 Hb_003494_230 0.0976510639 - - starch synthase isoform II [Manihot esculenta]
9 Hb_001318_270 0.0988782562 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
10 Hb_001357_020 0.1030710694 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
11 Hb_009486_140 0.1038943829 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
12 Hb_000976_300 0.1058682168 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
13 Hb_000352_270 0.1067453718 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
14 Hb_001946_290 0.1078535018 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like isoform X1 [Jatropha curcas]
15 Hb_001726_020 0.1094690689 - - PREDICTED: endophilin-A1 [Jatropha curcas]
16 Hb_001671_010 0.1100643211 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
17 Hb_000003_710 0.1104211834 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
18 Hb_000028_480 0.1113714993 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
19 Hb_005116_050 0.1120939725 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_000783_020 0.1123651243 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_070256_010 Hb_070256_010 Hb_003688_150 Hb_003688_150 Hb_070256_010--Hb_003688_150 Hb_003020_220 Hb_003020_220 Hb_070256_010--Hb_003020_220 Hb_000603_110 Hb_000603_110 Hb_070256_010--Hb_000603_110 Hb_009382_010 Hb_009382_010 Hb_070256_010--Hb_009382_010 Hb_002006_030 Hb_002006_030 Hb_070256_010--Hb_002006_030 Hb_002660_010 Hb_002660_010 Hb_070256_010--Hb_002660_010 Hb_000783_020 Hb_000783_020 Hb_003688_150--Hb_000783_020 Hb_000120_460 Hb_000120_460 Hb_003688_150--Hb_000120_460 Hb_001619_070 Hb_001619_070 Hb_003688_150--Hb_001619_070 Hb_001318_270 Hb_001318_270 Hb_003688_150--Hb_001318_270 Hb_103118_010 Hb_103118_010 Hb_003688_150--Hb_103118_010 Hb_086639_040 Hb_086639_040 Hb_003688_150--Hb_086639_040 Hb_000352_270 Hb_000352_270 Hb_003020_220--Hb_000352_270 Hb_079312_010 Hb_079312_010 Hb_003020_220--Hb_079312_010 Hb_002988_040 Hb_002988_040 Hb_003020_220--Hb_002988_040 Hb_082609_010 Hb_082609_010 Hb_003020_220--Hb_082609_010 Hb_005237_050 Hb_005237_050 Hb_003020_220--Hb_005237_050 Hb_000510_290 Hb_000510_290 Hb_003020_220--Hb_000510_290 Hb_000603_110--Hb_009382_010 Hb_001085_060 Hb_001085_060 Hb_000603_110--Hb_001085_060 Hb_002316_150 Hb_002316_150 Hb_000603_110--Hb_002316_150 Hb_007441_220 Hb_007441_220 Hb_000603_110--Hb_007441_220 Hb_000041_100 Hb_000041_100 Hb_000603_110--Hb_000041_100 Hb_008554_130 Hb_008554_130 Hb_000603_110--Hb_008554_130 Hb_004800_080 Hb_004800_080 Hb_009382_010--Hb_004800_080 Hb_002725_120 Hb_002725_120 Hb_009382_010--Hb_002725_120 Hb_000227_120 Hb_000227_120 Hb_009382_010--Hb_000227_120 Hb_000291_050 Hb_000291_050 Hb_009382_010--Hb_000291_050 Hb_009382_010--Hb_008554_130 Hb_009486_140 Hb_009486_140 Hb_002006_030--Hb_009486_140 Hb_002006_030--Hb_002660_010 Hb_002218_090 Hb_002218_090 Hb_002006_030--Hb_002218_090 Hb_000684_470 Hb_000684_470 Hb_002006_030--Hb_000684_470 Hb_001862_210 Hb_001862_210 Hb_002006_030--Hb_001862_210 Hb_002660_010--Hb_000227_120 Hb_005348_140 Hb_005348_140 Hb_002660_010--Hb_005348_140 Hb_002660_010--Hb_001318_270 Hb_002391_310 Hb_002391_310 Hb_002660_010--Hb_002391_310 Hb_002660_010--Hb_009486_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.11425 4.32884 4.27974 1.75784 3.75931 5.0493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.54802 6.6358 8.16121 6.39691 7.66725

CAGE analysis