Hb_130279_010

Information

Type -
Description -
Location Contig130279: 157-2354
Sequence    

Annotation

kegg
ID pop:POPTR_0012s11560g
description hypothetical protein
nr
ID XP_012090522.1
description PREDICTED: ATP-dependent DNA helicase SRS2-like protein At4g25120 [Jatropha curcas]
swissprot
ID D1KF50
description ATP-dependent DNA helicase SRS2-like protein At4g25120 OS=Arabidopsis thaliana GN=SRS2 PE=1 SV=1
trembl
ID U5FUK2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s11560g PE=4 SV=1
Gene Ontology
ID GO:0003677
description p-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09058: 156-1127 , PASA_asmbl_09059: 1147-1599 , PASA_asmbl_09060: 1663-2356
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_130279_010 0.0 - - PREDICTED: ATP-dependent DNA helicase SRS2-like protein At4g25120 [Jatropha curcas]
2 Hb_010422_010 0.110967581 - - phosphofructokinase [Hevea brasiliensis]
3 Hb_002028_150 0.1119594458 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
4 Hb_002631_030 0.1128412683 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001357_300 0.1140977066 - - PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_000483_260 0.1167373574 - - PREDICTED: dihydroorotase, mitochondrial isoform X1 [Populus euphratica]
7 Hb_001314_070 0.1202116164 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000529_170 0.1239704494 - - hypothetical protein JCGZ_14691 [Jatropha curcas]
9 Hb_003086_150 0.125979154 - - PREDICTED: uncharacterized protein LOC105635789 [Jatropha curcas]
10 Hb_001726_020 0.1273435342 - - PREDICTED: endophilin-A1 [Jatropha curcas]
11 Hb_001541_290 0.1278176452 - - PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]
12 Hb_005539_280 0.1297465674 - - PREDICTED: uncharacterized protein LOC105644562 [Jatropha curcas]
13 Hb_001414_030 0.1306579173 - - PREDICTED: aspartate-semialdehyde dehydrogenase [Jatropha curcas]
14 Hb_009620_020 0.1307380056 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000329_760 0.1319957555 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
16 Hb_000236_040 0.1347130112 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
17 Hb_029888_010 0.1360752904 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Nicotiana tomentosiformis]
18 Hb_002007_080 0.1386796108 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
19 Hb_003266_100 0.1397570277 - - Isomerase protein [Gossypium arboreum]
20 Hb_001507_040 0.1409231821 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_130279_010 Hb_130279_010 Hb_010422_010 Hb_010422_010 Hb_130279_010--Hb_010422_010 Hb_002028_150 Hb_002028_150 Hb_130279_010--Hb_002028_150 Hb_002631_030 Hb_002631_030 Hb_130279_010--Hb_002631_030 Hb_001357_300 Hb_001357_300 Hb_130279_010--Hb_001357_300 Hb_000483_260 Hb_000483_260 Hb_130279_010--Hb_000483_260 Hb_001314_070 Hb_001314_070 Hb_130279_010--Hb_001314_070 Hb_002007_080 Hb_002007_080 Hb_010422_010--Hb_002007_080 Hb_002471_290 Hb_002471_290 Hb_010422_010--Hb_002471_290 Hb_010863_010 Hb_010863_010 Hb_010422_010--Hb_010863_010 Hb_000510_340 Hb_000510_340 Hb_010422_010--Hb_000510_340 Hb_000381_120 Hb_000381_120 Hb_010422_010--Hb_000381_120 Hb_003228_110 Hb_003228_110 Hb_010422_010--Hb_003228_110 Hb_034482_020 Hb_034482_020 Hb_002028_150--Hb_034482_020 Hb_000976_430 Hb_000976_430 Hb_002028_150--Hb_000976_430 Hb_000207_050 Hb_000207_050 Hb_002028_150--Hb_000207_050 Hb_002374_100 Hb_002374_100 Hb_002028_150--Hb_002374_100 Hb_001205_120 Hb_001205_120 Hb_002028_150--Hb_001205_120 Hb_000329_760 Hb_000329_760 Hb_002631_030--Hb_000329_760 Hb_001946_290 Hb_001946_290 Hb_002631_030--Hb_001946_290 Hb_000137_090 Hb_000137_090 Hb_002631_030--Hb_000137_090 Hb_000460_030 Hb_000460_030 Hb_002631_030--Hb_000460_030 Hb_002006_030 Hb_002006_030 Hb_002631_030--Hb_002006_030 Hb_031340_050 Hb_031340_050 Hb_002631_030--Hb_031340_050 Hb_001507_040 Hb_001507_040 Hb_001357_300--Hb_001507_040 Hb_001357_300--Hb_000483_260 Hb_001414_030 Hb_001414_030 Hb_001357_300--Hb_001414_030 Hb_034380_020 Hb_034380_020 Hb_001357_300--Hb_034380_020 Hb_000676_150 Hb_000676_150 Hb_001357_300--Hb_000676_150 Hb_001726_020 Hb_001726_020 Hb_001357_300--Hb_001726_020 Hb_000483_260--Hb_000460_030 Hb_003994_260 Hb_003994_260 Hb_000483_260--Hb_003994_260 Hb_000787_020 Hb_000787_020 Hb_000483_260--Hb_000787_020 Hb_001218_030 Hb_001218_030 Hb_000483_260--Hb_001218_030 Hb_005306_180 Hb_005306_180 Hb_000483_260--Hb_005306_180 Hb_000483_260--Hb_001314_070 Hb_000603_080 Hb_000603_080 Hb_001314_070--Hb_000603_080 Hb_000393_020 Hb_000393_020 Hb_001314_070--Hb_000393_020 Hb_000250_060 Hb_000250_060 Hb_001314_070--Hb_000250_060 Hb_010812_120 Hb_010812_120 Hb_001314_070--Hb_010812_120 Hb_004117_260 Hb_004117_260 Hb_001314_070--Hb_004117_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.06023 0.812015 1.5616 0.64361 0.67056 0.670144
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.12468 1.56807 2.44107 2.31257 0.822118

CAGE analysis