Hb_001511_070

Information

Type transcription factor
Description TF Family: G2-like
Location Contig1511: 120207-121830
Sequence    

Annotation

kegg
ID pop:POPTR_0010s19310g
description hypothetical protein
nr
ID XP_006378651.1
description hypothetical protein POPTR_0010s19310g [Populus trichocarpa]
swissprot
ID Q700D9
description Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2
trembl
ID U5FZ14
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s19310g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001511_070 0.0 transcription factor TF Family: G2-like hypothetical protein POPTR_0010s19310g [Populus trichocarpa]
2 Hb_000283_080 0.0967017995 - - -
3 Hb_005188_020 0.1208262857 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
4 Hb_002205_130 0.1233377683 - - hypothetical protein B456_008G176100 [Gossypium raimondii]
5 Hb_003020_220 0.1304119562 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
6 Hb_029888_010 0.1361058999 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Nicotiana tomentosiformis]
7 Hb_000856_150 0.1389360026 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
8 Hb_000116_430 0.1420787406 - - PREDICTED: mitochondrial phosphate carrier protein 1, mitochondrial-like isoform X1 [Jatropha curcas]
9 Hb_001898_070 0.1430218437 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16610 [Jatropha curcas]
10 Hb_070256_010 0.1443795394 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105630457 [Jatropha curcas]
11 Hb_030565_030 0.1451169013 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
12 Hb_001318_270 0.1455671214 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
13 Hb_001373_180 0.1473866166 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
14 Hb_013607_040 0.1493125622 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Jatropha curcas]
15 Hb_002307_170 0.1493290429 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
16 Hb_000165_160 0.1498001939 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
17 Hb_012325_020 0.15217327 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
18 Hb_000352_270 0.1524613951 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
19 Hb_000152_110 0.1526700396 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_000367_260 0.1536754092 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]

Gene co-expression network

sample Hb_001511_070 Hb_001511_070 Hb_000283_080 Hb_000283_080 Hb_001511_070--Hb_000283_080 Hb_005188_020 Hb_005188_020 Hb_001511_070--Hb_005188_020 Hb_002205_130 Hb_002205_130 Hb_001511_070--Hb_002205_130 Hb_003020_220 Hb_003020_220 Hb_001511_070--Hb_003020_220 Hb_029888_010 Hb_029888_010 Hb_001511_070--Hb_029888_010 Hb_000856_150 Hb_000856_150 Hb_001511_070--Hb_000856_150 Hb_129910_010 Hb_129910_010 Hb_000283_080--Hb_129910_010 Hb_002307_170 Hb_002307_170 Hb_000283_080--Hb_002307_170 Hb_001898_070 Hb_001898_070 Hb_000283_080--Hb_001898_070 Hb_000122_210 Hb_000122_210 Hb_000283_080--Hb_000122_210 Hb_000020_120 Hb_000020_120 Hb_000283_080--Hb_000020_120 Hb_000230_500 Hb_000230_500 Hb_005188_020--Hb_000230_500 Hb_030565_030 Hb_030565_030 Hb_005188_020--Hb_030565_030 Hb_000041_100 Hb_000041_100 Hb_005188_020--Hb_000041_100 Hb_004374_070 Hb_004374_070 Hb_005188_020--Hb_004374_070 Hb_001318_270 Hb_001318_270 Hb_005188_020--Hb_001318_270 Hb_003371_090 Hb_003371_090 Hb_005188_020--Hb_003371_090 Hb_011030_020 Hb_011030_020 Hb_002205_130--Hb_011030_020 Hb_012799_100 Hb_012799_100 Hb_002205_130--Hb_012799_100 Hb_005162_070 Hb_005162_070 Hb_002205_130--Hb_005162_070 Hb_002284_200 Hb_002284_200 Hb_002205_130--Hb_002284_200 Hb_019263_020 Hb_019263_020 Hb_002205_130--Hb_019263_020 Hb_002027_040 Hb_002027_040 Hb_002205_130--Hb_002027_040 Hb_000352_270 Hb_000352_270 Hb_003020_220--Hb_000352_270 Hb_079312_010 Hb_079312_010 Hb_003020_220--Hb_079312_010 Hb_002988_040 Hb_002988_040 Hb_003020_220--Hb_002988_040 Hb_082609_010 Hb_082609_010 Hb_003020_220--Hb_082609_010 Hb_005237_050 Hb_005237_050 Hb_003020_220--Hb_005237_050 Hb_000510_290 Hb_000510_290 Hb_003020_220--Hb_000510_290 Hb_000116_430 Hb_000116_430 Hb_029888_010--Hb_000116_430 Hb_130279_010 Hb_130279_010 Hb_029888_010--Hb_130279_010 Hb_009455_020 Hb_009455_020 Hb_029888_010--Hb_009455_020 Hb_070256_010 Hb_070256_010 Hb_029888_010--Hb_070256_010 Hb_029888_010--Hb_000856_150 Hb_008725_170 Hb_008725_170 Hb_000856_150--Hb_008725_170 Hb_000856_150--Hb_000020_120 Hb_000856_150--Hb_002205_130 Hb_000856_150--Hb_000116_430 Hb_000076_020 Hb_000076_020 Hb_000856_150--Hb_000076_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.855167 1.21402 0.827681 0.268008 0.703137 0.673917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.19683 1.78197 3.74417 1.41538 2.15168

CAGE analysis