Hb_000122_210

Information

Type -
Description -
Location Contig122: 156978-161231
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000122_210 0.0 - - -
2 Hb_000283_080 0.1319623372 - - -
3 Hb_007747_210 0.1421917576 - - unnamed protein product [Vitis vinifera]
4 Hb_000120_040 0.1466901904 - - -
5 Hb_006420_050 0.1525293761 - - helicase, putative [Ricinus communis]
6 Hb_042202_030 0.160549911 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
7 Hb_002338_050 0.1616034344 - - PREDICTED: uncharacterized protein LOC105118489 isoform X1 [Populus euphratica]
8 Hb_002131_030 0.1624914583 - - PREDICTED: pyruvate kinase isozyme G, chloroplastic [Jatropha curcas]
9 Hb_005237_050 0.1661859083 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105630924 [Jatropha curcas]
10 Hb_000001_130 0.1666674773 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
11 Hb_001511_070 0.1679812469 transcription factor TF Family: G2-like hypothetical protein POPTR_0010s19310g [Populus trichocarpa]
12 Hb_100886_010 0.1702234256 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
13 Hb_003020_220 0.1725555491 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
14 Hb_001242_130 0.1755678401 - - PREDICTED: U3 small nucleolar RNA-associated protein 4-like [Jatropha curcas]
15 Hb_079312_010 0.1759675176 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000116_430 0.1769148828 - - PREDICTED: mitochondrial phosphate carrier protein 1, mitochondrial-like isoform X1 [Jatropha curcas]
17 Hb_146680_010 0.1780655833 - - hypothetical protein JCGZ_15486 [Jatropha curcas]
18 Hb_070256_010 0.1790775914 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105630457 [Jatropha curcas]
19 Hb_000479_140 0.1845718429 - - TPA: hypothetical protein ZEAMMB73_881803, partial [Zea mays]
20 Hb_012022_170 0.1850827953 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]

Gene co-expression network

sample Hb_000122_210 Hb_000122_210 Hb_000283_080 Hb_000283_080 Hb_000122_210--Hb_000283_080 Hb_007747_210 Hb_007747_210 Hb_000122_210--Hb_007747_210 Hb_000120_040 Hb_000120_040 Hb_000122_210--Hb_000120_040 Hb_006420_050 Hb_006420_050 Hb_000122_210--Hb_006420_050 Hb_042202_030 Hb_042202_030 Hb_000122_210--Hb_042202_030 Hb_002338_050 Hb_002338_050 Hb_000122_210--Hb_002338_050 Hb_001511_070 Hb_001511_070 Hb_000283_080--Hb_001511_070 Hb_129910_010 Hb_129910_010 Hb_000283_080--Hb_129910_010 Hb_002307_170 Hb_002307_170 Hb_000283_080--Hb_002307_170 Hb_001898_070 Hb_001898_070 Hb_000283_080--Hb_001898_070 Hb_000020_120 Hb_000020_120 Hb_000283_080--Hb_000020_120 Hb_007747_210--Hb_042202_030 Hb_079312_010 Hb_079312_010 Hb_007747_210--Hb_079312_010 Hb_005237_050 Hb_005237_050 Hb_007747_210--Hb_005237_050 Hb_009455_020 Hb_009455_020 Hb_007747_210--Hb_009455_020 Hb_000215_070 Hb_000215_070 Hb_007747_210--Hb_000215_070 Hb_003020_220 Hb_003020_220 Hb_007747_210--Hb_003020_220 Hb_000120_040--Hb_006420_050 Hb_001214_180 Hb_001214_180 Hb_000120_040--Hb_001214_180 Hb_000417_200 Hb_000417_200 Hb_000120_040--Hb_000417_200 Hb_000120_040--Hb_005237_050 Hb_009778_060 Hb_009778_060 Hb_000120_040--Hb_009778_060 Hb_006420_050--Hb_005237_050 Hb_000130_220 Hb_000130_220 Hb_006420_050--Hb_000130_220 Hb_006420_050--Hb_003020_220 Hb_005116_050 Hb_005116_050 Hb_006420_050--Hb_005116_050 Hb_002988_040 Hb_002988_040 Hb_006420_050--Hb_002988_040 Hb_042202_030--Hb_000020_120 Hb_003688_150 Hb_003688_150 Hb_042202_030--Hb_003688_150 Hb_002799_070 Hb_002799_070 Hb_042202_030--Hb_002799_070 Hb_042202_030--Hb_079312_010 Hb_000116_430 Hb_000116_430 Hb_042202_030--Hb_000116_430 Hb_004480_100 Hb_004480_100 Hb_002338_050--Hb_004480_100 Hb_007023_030 Hb_007023_030 Hb_002338_050--Hb_007023_030 Hb_003467_030 Hb_003467_030 Hb_002338_050--Hb_003467_030 Hb_001242_130 Hb_001242_130 Hb_002338_050--Hb_001242_130 Hb_002768_060 Hb_002768_060 Hb_002338_050--Hb_002768_060 Hb_000789_200 Hb_000789_200 Hb_002338_050--Hb_000789_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.25257 0.654269 0.298342 0.136917 0.401892 0.460942
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.653474 1.30808 1.27819 1.18757 2.0819

CAGE analysis