Hb_000215_070

Information

Type -
Description -
Location Contig215: 48664-50511
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09480g
description POPTRDRAFT_779377; tRNA/rRNA methyltransferase family protein
nr
ID XP_011016266.1
description PREDICTED: uncharacterized protein LOC105119782 isoform X1 [Populus euphratica]
swissprot
ID O94631
description rRNA methyltransferase 1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrm1 PE=3 SV=1
trembl
ID B9ILU6
description tRNA/rRNA methyltransferase family protein OS=Populus trichocarpa GN=POPTR_0018s09480g PE=4 SV=2
Gene Ontology
ID GO:0003723
description trna rrna methyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_070 0.0 - - PREDICTED: uncharacterized protein LOC105119782 isoform X1 [Populus euphratica]
2 Hb_005116_050 0.1011056866 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_005253_030 0.1066011635 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000665_130 0.1084174045 - - PREDICTED: uncharacterized protein LOC105637599 isoform X2 [Jatropha curcas]
5 Hb_015941_020 0.1111168863 - - -
6 Hb_001257_010 0.1115580364 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]
7 Hb_001589_010 0.1120643621 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
8 Hb_012627_040 0.1126499328 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
9 Hb_001049_110 0.1127884517 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_001546_060 0.1157559694 - - PREDICTED: uncharacterized protein LOC105133943 isoform X4 [Populus euphratica]
11 Hb_001369_750 0.1170601131 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
12 Hb_007747_210 0.1189141845 - - unnamed protein product [Vitis vinifera]
13 Hb_005686_090 0.1190638853 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
14 Hb_000720_050 0.120201565 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
15 Hb_079312_010 0.1214715662 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000282_080 0.1239593803 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001080_090 0.1254517585 - - PREDICTED: BTB/POZ domain-containing protein At2g30600 isoform X1 [Jatropha curcas]
18 Hb_001366_180 0.1256364797 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
19 Hb_000789_200 0.1256854125 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
20 Hb_000120_290 0.1259059765 - - PREDICTED: N-acylphosphatidylethanolamine synthase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000215_070 Hb_000215_070 Hb_005116_050 Hb_005116_050 Hb_000215_070--Hb_005116_050 Hb_005253_030 Hb_005253_030 Hb_000215_070--Hb_005253_030 Hb_000665_130 Hb_000665_130 Hb_000215_070--Hb_000665_130 Hb_015941_020 Hb_015941_020 Hb_000215_070--Hb_015941_020 Hb_001257_010 Hb_001257_010 Hb_000215_070--Hb_001257_010 Hb_001589_010 Hb_001589_010 Hb_000215_070--Hb_001589_010 Hb_000130_220 Hb_000130_220 Hb_005116_050--Hb_000130_220 Hb_001157_240 Hb_001157_240 Hb_005116_050--Hb_001157_240 Hb_000482_040 Hb_000482_040 Hb_005116_050--Hb_000482_040 Hb_001163_060 Hb_001163_060 Hb_005116_050--Hb_001163_060 Hb_008033_040 Hb_008033_040 Hb_005116_050--Hb_008033_040 Hb_005736_020 Hb_005736_020 Hb_005116_050--Hb_005736_020 Hb_036790_080 Hb_036790_080 Hb_005253_030--Hb_036790_080 Hb_001008_120 Hb_001008_120 Hb_005253_030--Hb_001008_120 Hb_000261_060 Hb_000261_060 Hb_005253_030--Hb_000261_060 Hb_001936_090 Hb_001936_090 Hb_005253_030--Hb_001936_090 Hb_000465_190 Hb_000465_190 Hb_005253_030--Hb_000465_190 Hb_002758_010 Hb_002758_010 Hb_005253_030--Hb_002758_010 Hb_002276_020 Hb_002276_020 Hb_000665_130--Hb_002276_020 Hb_000186_050 Hb_000186_050 Hb_000665_130--Hb_000186_050 Hb_001369_750 Hb_001369_750 Hb_000665_130--Hb_001369_750 Hb_011316_090 Hb_011316_090 Hb_000665_130--Hb_011316_090 Hb_000665_130--Hb_005736_020 Hb_007508_060 Hb_007508_060 Hb_000665_130--Hb_007508_060 Hb_001671_010 Hb_001671_010 Hb_015941_020--Hb_001671_010 Hb_001049_110 Hb_001049_110 Hb_015941_020--Hb_001049_110 Hb_010883_040 Hb_010883_040 Hb_015941_020--Hb_010883_040 Hb_005686_090 Hb_005686_090 Hb_015941_020--Hb_005686_090 Hb_018133_090 Hb_018133_090 Hb_015941_020--Hb_018133_090 Hb_000883_060 Hb_000883_060 Hb_015941_020--Hb_000883_060 Hb_000041_110 Hb_000041_110 Hb_001257_010--Hb_000041_110 Hb_002518_260 Hb_002518_260 Hb_001257_010--Hb_002518_260 Hb_000258_160 Hb_000258_160 Hb_001257_010--Hb_000258_160 Hb_004079_060 Hb_004079_060 Hb_001257_010--Hb_004079_060 Hb_019863_070 Hb_019863_070 Hb_001257_010--Hb_019863_070 Hb_001304_110 Hb_001304_110 Hb_001257_010--Hb_001304_110 Hb_002205_230 Hb_002205_230 Hb_001589_010--Hb_002205_230 Hb_000720_050 Hb_000720_050 Hb_001589_010--Hb_000720_050 Hb_001589_010--Hb_001936_090 Hb_001589_010--Hb_005116_050 Hb_001789_110 Hb_001789_110 Hb_001589_010--Hb_001789_110 Hb_004450_040 Hb_004450_040 Hb_001589_010--Hb_004450_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.62076 7.53706 3.99997 6.71996 7.91978 4.75934
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.633 10.0255 8.7691 7.057 17.6201

CAGE analysis