Hb_006420_050

Information

Type -
Description -
Location Contig6420: 71032-81589
Sequence    

Annotation

kegg
ID rcu:RCOM_0699620
description helicase, putative
nr
ID XP_002520197.1
description helicase, putative [Ricinus communis]
swissprot
ID B9DFG3
description DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic OS=Arabidopsis thaliana GN=ISE2 PE=1 SV=2
trembl
ID B9S2H8
description Helicase, putative OS=Ricinus communis GN=RCOM_0699620 PE=4 SV=1
Gene Ontology
ID GO:0009570
description dead-box atp-dependent rna helicase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52202: 72218-72485 , PASA_asmbl_52203: 72726-73024 , PASA_asmbl_52204: 73362-74062 , PASA_asmbl_52205: 73811-77010 , PASA_asmbl_52206: 74660-74866
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006420_050 0.0 - - helicase, putative [Ricinus communis]
2 Hb_005237_050 0.0865032042 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105630924 [Jatropha curcas]
3 Hb_000120_040 0.0898361138 - - -
4 Hb_000130_220 0.1233106225 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Jatropha curcas]
5 Hb_003020_220 0.1233133053 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
6 Hb_005116_050 0.1251719531 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_002988_040 0.1285509968 - - -
8 Hb_000702_080 0.1344390913 - - PREDICTED: uncharacterized protein LOC105630492 [Jatropha curcas]
9 Hb_000510_290 0.1349352467 - - PREDICTED: protein OSB2, chloroplastic-like isoform X2 [Jatropha curcas]
10 Hb_000417_200 0.1415199037 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic [Jatropha curcas]
11 Hb_009778_060 0.142163591 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
12 Hb_001969_110 0.1431587493 - - PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic [Jatropha curcas]
13 Hb_000482_040 0.1448836566 - - Protein YME1, putative [Ricinus communis]
14 Hb_070256_010 0.1468577149 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105630457 [Jatropha curcas]
15 Hb_000204_120 0.1474184199 - - PREDICTED: uncharacterized protein LOC105639239 [Jatropha curcas]
16 Hb_001049_110 0.1481739181 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_004635_090 0.1505760551 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Jatropha curcas]
18 Hb_001405_070 0.1506923634 - - PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Jatropha curcas]
19 Hb_002758_010 0.1511339517 - - PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]
20 Hb_000087_140 0.1517659173 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27270 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006420_050 Hb_006420_050 Hb_005237_050 Hb_005237_050 Hb_006420_050--Hb_005237_050 Hb_000120_040 Hb_000120_040 Hb_006420_050--Hb_000120_040 Hb_000130_220 Hb_000130_220 Hb_006420_050--Hb_000130_220 Hb_003020_220 Hb_003020_220 Hb_006420_050--Hb_003020_220 Hb_005116_050 Hb_005116_050 Hb_006420_050--Hb_005116_050 Hb_002988_040 Hb_002988_040 Hb_006420_050--Hb_002988_040 Hb_005237_050--Hb_003020_220 Hb_001049_110 Hb_001049_110 Hb_005237_050--Hb_001049_110 Hb_005237_050--Hb_005116_050 Hb_082609_010 Hb_082609_010 Hb_005237_050--Hb_082609_010 Hb_018133_090 Hb_018133_090 Hb_005237_050--Hb_018133_090 Hb_001214_180 Hb_001214_180 Hb_000120_040--Hb_001214_180 Hb_000417_200 Hb_000417_200 Hb_000120_040--Hb_000417_200 Hb_000120_040--Hb_005237_050 Hb_000122_210 Hb_000122_210 Hb_000120_040--Hb_000122_210 Hb_009778_060 Hb_009778_060 Hb_000120_040--Hb_009778_060 Hb_000130_220--Hb_005116_050 Hb_001766_050 Hb_001766_050 Hb_000130_220--Hb_001766_050 Hb_000482_040 Hb_000482_040 Hb_000130_220--Hb_000482_040 Hb_000510_290 Hb_000510_290 Hb_000130_220--Hb_000510_290 Hb_001541_120 Hb_001541_120 Hb_000130_220--Hb_001541_120 Hb_000805_100 Hb_000805_100 Hb_000130_220--Hb_000805_100 Hb_000352_270 Hb_000352_270 Hb_003020_220--Hb_000352_270 Hb_079312_010 Hb_079312_010 Hb_003020_220--Hb_079312_010 Hb_003020_220--Hb_002988_040 Hb_003020_220--Hb_082609_010 Hb_003020_220--Hb_000510_290 Hb_001157_240 Hb_001157_240 Hb_005116_050--Hb_001157_240 Hb_005116_050--Hb_000482_040 Hb_001163_060 Hb_001163_060 Hb_005116_050--Hb_001163_060 Hb_008033_040 Hb_008033_040 Hb_005116_050--Hb_008033_040 Hb_005736_020 Hb_005736_020 Hb_005116_050--Hb_005736_020 Hb_000230_500 Hb_000230_500 Hb_002988_040--Hb_000230_500 Hb_000913_020 Hb_000913_020 Hb_002988_040--Hb_000913_020 Hb_000497_300 Hb_000497_300 Hb_002988_040--Hb_000497_300 Hb_000041_100 Hb_000041_100 Hb_002988_040--Hb_000041_100 Hb_005686_090 Hb_005686_090 Hb_002988_040--Hb_005686_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.1472 4.3355 3.05249 1.79533 2.78164 3.19795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.35976 7.6087 6.48329 4.098 12.5335

CAGE analysis