Hb_000283_080

Information

Type -
Description -
Location Contig283: 95129-102656
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000283_080 0.0 - - -
2 Hb_001511_070 0.0967017995 transcription factor TF Family: G2-like hypothetical protein POPTR_0010s19310g [Populus trichocarpa]
3 Hb_129910_010 0.1234435178 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1X [Populus euphratica]
4 Hb_002307_170 0.1278918054 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
5 Hb_001898_070 0.1281689658 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16610 [Jatropha curcas]
6 Hb_000122_210 0.1319623372 - - -
7 Hb_000020_120 0.1401592282 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
8 Hb_000160_320 0.1403453181 - - hypothetical protein POPTR_0004s08730g [Populus trichocarpa]
9 Hb_007747_210 0.1457322215 - - unnamed protein product [Vitis vinifera]
10 Hb_042202_030 0.1465573204 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
11 Hb_003020_220 0.1468911947 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
12 Hb_079312_010 0.1481156136 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000479_140 0.1489118156 - - TPA: hypothetical protein ZEAMMB73_881803, partial [Zea mays]
14 Hb_000856_150 0.1505516265 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
15 Hb_000010_340 0.1507067796 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Jatropha curcas]
16 Hb_000116_430 0.1585303419 - - PREDICTED: mitochondrial phosphate carrier protein 1, mitochondrial-like isoform X1 [Jatropha curcas]
17 Hb_003688_150 0.1614435861 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
18 Hb_000883_060 0.1641385294 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3-like [Jatropha curcas]
19 Hb_000865_060 0.1642703413 transcription factor TF Family: FAR1 hypothetical protein CISIN_1g043648mg [Citrus sinensis]
20 Hb_008725_170 0.1642747111 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Populus euphratica]

Gene co-expression network

sample Hb_000283_080 Hb_000283_080 Hb_001511_070 Hb_001511_070 Hb_000283_080--Hb_001511_070 Hb_129910_010 Hb_129910_010 Hb_000283_080--Hb_129910_010 Hb_002307_170 Hb_002307_170 Hb_000283_080--Hb_002307_170 Hb_001898_070 Hb_001898_070 Hb_000283_080--Hb_001898_070 Hb_000122_210 Hb_000122_210 Hb_000283_080--Hb_000122_210 Hb_000020_120 Hb_000020_120 Hb_000283_080--Hb_000020_120 Hb_005188_020 Hb_005188_020 Hb_001511_070--Hb_005188_020 Hb_002205_130 Hb_002205_130 Hb_001511_070--Hb_002205_130 Hb_003020_220 Hb_003020_220 Hb_001511_070--Hb_003020_220 Hb_029888_010 Hb_029888_010 Hb_001511_070--Hb_029888_010 Hb_000856_150 Hb_000856_150 Hb_001511_070--Hb_000856_150 Hb_000340_390 Hb_000340_390 Hb_129910_010--Hb_000340_390 Hb_129910_010--Hb_001898_070 Hb_042202_030 Hb_042202_030 Hb_129910_010--Hb_042202_030 Hb_129910_010--Hb_000020_120 Hb_003688_150 Hb_003688_150 Hb_129910_010--Hb_003688_150 Hb_013607_040 Hb_013607_040 Hb_002307_170--Hb_013607_040 Hb_004846_070 Hb_004846_070 Hb_002307_170--Hb_004846_070 Hb_011534_030 Hb_011534_030 Hb_002307_170--Hb_011534_030 Hb_000479_140 Hb_000479_140 Hb_002307_170--Hb_000479_140 Hb_001014_230 Hb_001014_230 Hb_002307_170--Hb_001014_230 Hb_000471_110 Hb_000471_110 Hb_002307_170--Hb_000471_110 Hb_001898_070--Hb_002307_170 Hb_001898_070--Hb_004846_070 Hb_000002_050 Hb_000002_050 Hb_001898_070--Hb_000002_050 Hb_002585_020 Hb_002585_020 Hb_001898_070--Hb_002585_020 Hb_001898_070--Hb_000340_390 Hb_001454_190 Hb_001454_190 Hb_001898_070--Hb_001454_190 Hb_007747_210 Hb_007747_210 Hb_000122_210--Hb_007747_210 Hb_000120_040 Hb_000120_040 Hb_000122_210--Hb_000120_040 Hb_006420_050 Hb_006420_050 Hb_000122_210--Hb_006420_050 Hb_000122_210--Hb_042202_030 Hb_002338_050 Hb_002338_050 Hb_000122_210--Hb_002338_050 Hb_000020_120--Hb_000479_140 Hb_000020_120--Hb_042202_030 Hb_000406_130 Hb_000406_130 Hb_000020_120--Hb_000406_130 Hb_007416_060 Hb_007416_060 Hb_000020_120--Hb_007416_060 Hb_008725_170 Hb_008725_170 Hb_000020_120--Hb_008725_170 Hb_003376_250 Hb_003376_250 Hb_000020_120--Hb_003376_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.104729 0.167881 0.0790089 0.0629318 0.160979 0.161632
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.214288 0.299741 0.674079 0.29081 0.513938

CAGE analysis