Hb_001014_230

Information

Type -
Description -
Location Contig1014: 178582-179520
Sequence    

Annotation

kegg
ID rcu:RCOM_1282720
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012081529.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Jatropha curcas]
swissprot
ID Q9CAY1
description Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
trembl
ID B9SD08
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1282720 PE=4 SV=1
Gene Ontology
ID GO:0008568
description pentatricopeptide repeat-containing protein at3g11460

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001014_230 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Jatropha curcas]
2 Hb_001235_030 0.0722746609 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
3 Hb_114336_020 0.087190987 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Fragaria vesca subsp. vesca]
4 Hb_011534_030 0.0894322874 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
5 Hb_002307_170 0.0921255922 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
6 Hb_092107_010 0.0921535813 - - conserved hypothetical protein [Ricinus communis]
7 Hb_013607_040 0.0965023126 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Jatropha curcas]
8 Hb_001294_010 0.09653703 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
9 Hb_027625_010 0.0978448847 - - PREDICTED: protein sym-1-like [Jatropha curcas]
10 Hb_000072_180 0.1028000496 - - PREDICTED: EVI5-like protein [Jatropha curcas]
11 Hb_064441_010 0.1034710616 - - PREDICTED: MACPF domain-containing protein CAD1-like isoform X1 [Jatropha curcas]
12 Hb_001140_220 0.1035436045 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_019263_020 0.1042520001 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Jatropha curcas]
14 Hb_002235_280 0.1058012515 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]
15 Hb_011537_110 0.1095746325 - - hypothetical protein PRUPE_ppa013160mg [Prunus persica]
16 Hb_003053_020 0.112123425 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
17 Hb_008554_070 0.1127377793 - - PREDICTED: peroxisome biogenesis protein 3-2 isoform X2 [Jatropha curcas]
18 Hb_009393_210 0.112936292 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
19 Hb_001946_330 0.1188896533 - - PREDICTED: transmembrane protein 128 [Jatropha curcas]
20 Hb_005162_070 0.1206828189 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001014_230 Hb_001014_230 Hb_001235_030 Hb_001235_030 Hb_001014_230--Hb_001235_030 Hb_114336_020 Hb_114336_020 Hb_001014_230--Hb_114336_020 Hb_011534_030 Hb_011534_030 Hb_001014_230--Hb_011534_030 Hb_002307_170 Hb_002307_170 Hb_001014_230--Hb_002307_170 Hb_092107_010 Hb_092107_010 Hb_001014_230--Hb_092107_010 Hb_013607_040 Hb_013607_040 Hb_001014_230--Hb_013607_040 Hb_005092_060 Hb_005092_060 Hb_001235_030--Hb_005092_060 Hb_001235_030--Hb_114336_020 Hb_008554_070 Hb_008554_070 Hb_001235_030--Hb_008554_070 Hb_001235_030--Hb_011534_030 Hb_002016_120 Hb_002016_120 Hb_001235_030--Hb_002016_120 Hb_172932_010 Hb_172932_010 Hb_114336_020--Hb_172932_010 Hb_114336_020--Hb_011534_030 Hb_001775_110 Hb_001775_110 Hb_114336_020--Hb_001775_110 Hb_000398_040 Hb_000398_040 Hb_114336_020--Hb_000398_040 Hb_027625_010 Hb_027625_010 Hb_114336_020--Hb_027625_010 Hb_011534_030--Hb_172932_010 Hb_000617_150 Hb_000617_150 Hb_011534_030--Hb_000617_150 Hb_003053_020 Hb_003053_020 Hb_011534_030--Hb_003053_020 Hb_019263_020 Hb_019263_020 Hb_011534_030--Hb_019263_020 Hb_009113_070 Hb_009113_070 Hb_011534_030--Hb_009113_070 Hb_001454_190 Hb_001454_190 Hb_011534_030--Hb_001454_190 Hb_002307_170--Hb_013607_040 Hb_004846_070 Hb_004846_070 Hb_002307_170--Hb_004846_070 Hb_002307_170--Hb_011534_030 Hb_000479_140 Hb_000479_140 Hb_002307_170--Hb_000479_140 Hb_000471_110 Hb_000471_110 Hb_002307_170--Hb_000471_110 Hb_001294_010 Hb_001294_010 Hb_092107_010--Hb_001294_010 Hb_004056_030 Hb_004056_030 Hb_092107_010--Hb_004056_030 Hb_092107_010--Hb_114336_020 Hb_000260_570 Hb_000260_570 Hb_092107_010--Hb_000260_570 Hb_002182_030 Hb_002182_030 Hb_092107_010--Hb_002182_030 Hb_013607_040--Hb_019263_020 Hb_001373_180 Hb_001373_180 Hb_013607_040--Hb_001373_180 Hb_002235_280 Hb_002235_280 Hb_013607_040--Hb_002235_280 Hb_013607_040--Hb_004846_070 Hb_005162_070 Hb_005162_070 Hb_013607_040--Hb_005162_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.37629 0.856263 0.896592 1.66073 0.991004 3.20451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.07119 4.48561 5.45407 1.66778 3.16148

CAGE analysis