Hb_092107_010

Information

Type -
Description -
Location Contig92107: 10831-15421
Sequence    

Annotation

kegg
ID rcu:RCOM_0557150
description hypothetical protein
nr
ID XP_002520709.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q54X41
description SOSS complex subunit B homolog OS=Dictyostelium discoideum GN=DDB_G0279223 PE=3 SV=1
trembl
ID B9S3Z0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0557150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62459: 10685-15930 , PASA_asmbl_62460: 10685-15930 , PASA_asmbl_62461: 10694-11006 , PASA_asmbl_62463: 11638-14706
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_092107_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001014_230 0.0921535813 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Jatropha curcas]
3 Hb_001294_010 0.0947875115 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
4 Hb_004056_030 0.0968170355 - - hypothetical protein 33 [Hevea brasiliensis]
5 Hb_114336_020 0.0995364312 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Fragaria vesca subsp. vesca]
6 Hb_000260_570 0.1003125666 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_002182_030 0.1130552637 - - hypothetical protein Csa_5G139175 [Cucumis sativus]
8 Hb_027625_010 0.1145062118 - - PREDICTED: protein sym-1-like [Jatropha curcas]
9 Hb_002239_060 0.1154625146 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
10 Hb_001073_050 0.1186880087 - - -
11 Hb_001357_010 0.1198444469 - - -
12 Hb_010608_050 0.1199296012 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
13 Hb_011534_030 0.1220618738 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
14 Hb_006472_050 0.1224298445 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 isoform X2 [Elaeis guineensis]
15 Hb_002742_090 0.1238794134 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
16 Hb_002235_280 0.1244207157 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]
17 Hb_001235_030 0.1249928995 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
18 Hb_011537_110 0.1257939927 - - hypothetical protein PRUPE_ppa013160mg [Prunus persica]
19 Hb_002307_170 0.1261552446 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
20 Hb_005162_070 0.1271683689 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_092107_010 Hb_092107_010 Hb_001014_230 Hb_001014_230 Hb_092107_010--Hb_001014_230 Hb_001294_010 Hb_001294_010 Hb_092107_010--Hb_001294_010 Hb_004056_030 Hb_004056_030 Hb_092107_010--Hb_004056_030 Hb_114336_020 Hb_114336_020 Hb_092107_010--Hb_114336_020 Hb_000260_570 Hb_000260_570 Hb_092107_010--Hb_000260_570 Hb_002182_030 Hb_002182_030 Hb_092107_010--Hb_002182_030 Hb_001235_030 Hb_001235_030 Hb_001014_230--Hb_001235_030 Hb_001014_230--Hb_114336_020 Hb_011534_030 Hb_011534_030 Hb_001014_230--Hb_011534_030 Hb_002307_170 Hb_002307_170 Hb_001014_230--Hb_002307_170 Hb_013607_040 Hb_013607_040 Hb_001014_230--Hb_013607_040 Hb_001294_010--Hb_001014_230 Hb_001357_010 Hb_001357_010 Hb_001294_010--Hb_001357_010 Hb_003294_100 Hb_003294_100 Hb_001294_010--Hb_003294_100 Hb_001294_010--Hb_002307_170 Hb_001294_010--Hb_004056_030 Hb_004056_030--Hb_114336_020 Hb_001073_050 Hb_001073_050 Hb_004056_030--Hb_001073_050 Hb_004056_030--Hb_000260_570 Hb_064441_010 Hb_064441_010 Hb_004056_030--Hb_064441_010 Hb_006472_050 Hb_006472_050 Hb_004056_030--Hb_006472_050 Hb_114336_020--Hb_001235_030 Hb_172932_010 Hb_172932_010 Hb_114336_020--Hb_172932_010 Hb_114336_020--Hb_011534_030 Hb_001775_110 Hb_001775_110 Hb_114336_020--Hb_001775_110 Hb_000398_040 Hb_000398_040 Hb_114336_020--Hb_000398_040 Hb_027625_010 Hb_027625_010 Hb_114336_020--Hb_027625_010 Hb_005162_070 Hb_005162_070 Hb_000260_570--Hb_005162_070 Hb_001493_180 Hb_001493_180 Hb_000260_570--Hb_001493_180 Hb_001090_050 Hb_001090_050 Hb_000260_570--Hb_001090_050 Hb_002027_040 Hb_002027_040 Hb_000260_570--Hb_002027_040 Hb_010608_050 Hb_010608_050 Hb_000260_570--Hb_010608_050 Hb_000617_150 Hb_000617_150 Hb_000260_570--Hb_000617_150 Hb_002182_030--Hb_006472_050 Hb_001135_210 Hb_001135_210 Hb_002182_030--Hb_001135_210 Hb_000975_300 Hb_000975_300 Hb_002182_030--Hb_000975_300 Hb_007594_120 Hb_007594_120 Hb_002182_030--Hb_007594_120 Hb_002876_120 Hb_002876_120 Hb_002182_030--Hb_002876_120 Hb_003581_260 Hb_003581_260 Hb_002182_030--Hb_003581_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.05867 2.59958 2.65184 7.86682 4.77615 10.8018
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0964 22.9237 32.0522 6.58328 11.4691

CAGE analysis