Hb_003294_100

Information

Type -
Description -
Location Contig3294: 171965-177944
Sequence    

Annotation

kegg
ID csv:101224564
description uncharacterized LOC101224564
nr
ID CAN63464.1
description hypothetical protein VITISV_009629 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BGI9
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009629 PE=4 SV=1
Gene Ontology
ID GO:0005886
description transducin wd40 repeat-like superfamily protein isoform 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34633: 121367-177753 , PASA_asmbl_34634: 136795-172075
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003294_100 0.0 - - hypothetical protein VITISV_009629 [Vitis vinifera]
2 Hb_001294_010 0.1162632401 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
3 Hb_003117_010 0.1328339588 - - PREDICTED: uncharacterized protein LOC100259103 isoform X1 [Vitis vinifera]
4 Hb_009393_210 0.1442480735 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
5 Hb_000648_020 0.1450550703 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
6 Hb_012490_050 0.155279333 - - PREDICTED: uncharacterized protein LOC105637921 [Jatropha curcas]
7 Hb_001014_230 0.1565216717 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Jatropha curcas]
8 Hb_027751_060 0.1602759118 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Jatropha curcas]
9 Hb_092107_010 0.161070357 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000072_180 0.1635722108 - - PREDICTED: EVI5-like protein [Jatropha curcas]
11 Hb_001357_010 0.1642387087 - - -
12 Hb_004056_030 0.1655106467 - - hypothetical protein 33 [Hevea brasiliensis]
13 Hb_001484_010 0.1657778899 - - hypothetical protein POPTR_0005s07440g [Populus trichocarpa]
14 Hb_001235_030 0.1662957856 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
15 Hb_000346_040 0.1682004006 - - -
16 Hb_005092_060 0.1714552693 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
17 Hb_002719_080 0.1723401509 - - hypothetical protein POPTR_0006s27920g [Populus trichocarpa]
18 Hb_011534_030 0.1739426753 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
19 Hb_001006_260 0.1746710682 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
20 Hb_006420_100 0.1747332246 - - PREDICTED: protein bicaudal C homolog 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003294_100 Hb_003294_100 Hb_001294_010 Hb_001294_010 Hb_003294_100--Hb_001294_010 Hb_003117_010 Hb_003117_010 Hb_003294_100--Hb_003117_010 Hb_009393_210 Hb_009393_210 Hb_003294_100--Hb_009393_210 Hb_000648_020 Hb_000648_020 Hb_003294_100--Hb_000648_020 Hb_012490_050 Hb_012490_050 Hb_003294_100--Hb_012490_050 Hb_001014_230 Hb_001014_230 Hb_003294_100--Hb_001014_230 Hb_092107_010 Hb_092107_010 Hb_001294_010--Hb_092107_010 Hb_001294_010--Hb_001014_230 Hb_001357_010 Hb_001357_010 Hb_001294_010--Hb_001357_010 Hb_002307_170 Hb_002307_170 Hb_001294_010--Hb_002307_170 Hb_004056_030 Hb_004056_030 Hb_001294_010--Hb_004056_030 Hb_027751_060 Hb_027751_060 Hb_003117_010--Hb_027751_060 Hb_013893_010 Hb_013893_010 Hb_003117_010--Hb_013893_010 Hb_003117_010--Hb_092107_010 Hb_003117_010--Hb_001294_010 Hb_002078_480 Hb_002078_480 Hb_003117_010--Hb_002078_480 Hb_001083_020 Hb_001083_020 Hb_009393_210--Hb_001083_020 Hb_002471_080 Hb_002471_080 Hb_009393_210--Hb_002471_080 Hb_001360_050 Hb_001360_050 Hb_009393_210--Hb_001360_050 Hb_000046_290 Hb_000046_290 Hb_009393_210--Hb_000046_290 Hb_004724_340 Hb_004724_340 Hb_009393_210--Hb_004724_340 Hb_001775_110 Hb_001775_110 Hb_009393_210--Hb_001775_110 Hb_002025_300 Hb_002025_300 Hb_000648_020--Hb_002025_300 Hb_124755_010 Hb_124755_010 Hb_000648_020--Hb_124755_010 Hb_001427_230 Hb_001427_230 Hb_000648_020--Hb_001427_230 Hb_000648_020--Hb_012490_050 Hb_000224_090 Hb_000224_090 Hb_000648_020--Hb_000224_090 Hb_000648_020--Hb_002471_080 Hb_000834_030 Hb_000834_030 Hb_012490_050--Hb_000834_030 Hb_005463_140 Hb_005463_140 Hb_012490_050--Hb_005463_140 Hb_011644_030 Hb_011644_030 Hb_012490_050--Hb_011644_030 Hb_000707_020 Hb_000707_020 Hb_012490_050--Hb_000707_020 Hb_000817_030 Hb_000817_030 Hb_012490_050--Hb_000817_030 Hb_004659_060 Hb_004659_060 Hb_012490_050--Hb_004659_060 Hb_001235_030 Hb_001235_030 Hb_001014_230--Hb_001235_030 Hb_114336_020 Hb_114336_020 Hb_001014_230--Hb_114336_020 Hb_011534_030 Hb_011534_030 Hb_001014_230--Hb_011534_030 Hb_001014_230--Hb_002307_170 Hb_001014_230--Hb_092107_010 Hb_013607_040 Hb_013607_040 Hb_001014_230--Hb_013607_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.00849 1.58679 0.703528 3.428 2.64958 9.4691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3026 16.1108 16.9948 8.83743 10.5977

CAGE analysis