Hb_001357_010

Information

Type -
Description -
Location Contig1357: 9722-11511
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_010 0.0 - - -
2 Hb_001294_010 0.1046948534 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
3 Hb_001189_050 0.112357625 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Jatropha curcas]
4 Hb_092107_010 0.1198444469 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011030_020 0.1287245444 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
6 Hb_005162_070 0.131693939 - - conserved hypothetical protein [Ricinus communis]
7 Hb_029510_040 0.1322896375 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
8 Hb_002307_170 0.1331719711 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
9 Hb_000329_180 0.1361755927 - - Auxin-induced protein X10A, putative [Ricinus communis]
10 Hb_001373_180 0.1372207428 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
11 Hb_000260_570 0.1372694653 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_010608_050 0.1386331474 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
13 Hb_011534_030 0.1389481601 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
14 Hb_013607_040 0.1400471795 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Jatropha curcas]
15 Hb_002078_440 0.1401094174 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
16 Hb_002205_130 0.1410467514 - - hypothetical protein B456_008G176100 [Gossypium raimondii]
17 Hb_007645_080 0.1422531116 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
18 Hb_002239_060 0.1435166047 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
19 Hb_009393_210 0.1451243615 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
20 Hb_001014_230 0.146071776 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Jatropha curcas]

Gene co-expression network

sample Hb_001357_010 Hb_001357_010 Hb_001294_010 Hb_001294_010 Hb_001357_010--Hb_001294_010 Hb_001189_050 Hb_001189_050 Hb_001357_010--Hb_001189_050 Hb_092107_010 Hb_092107_010 Hb_001357_010--Hb_092107_010 Hb_011030_020 Hb_011030_020 Hb_001357_010--Hb_011030_020 Hb_005162_070 Hb_005162_070 Hb_001357_010--Hb_005162_070 Hb_029510_040 Hb_029510_040 Hb_001357_010--Hb_029510_040 Hb_001294_010--Hb_092107_010 Hb_001014_230 Hb_001014_230 Hb_001294_010--Hb_001014_230 Hb_003294_100 Hb_003294_100 Hb_001294_010--Hb_003294_100 Hb_002307_170 Hb_002307_170 Hb_001294_010--Hb_002307_170 Hb_004056_030 Hb_004056_030 Hb_001294_010--Hb_004056_030 Hb_001189_050--Hb_011030_020 Hb_000019_060 Hb_000019_060 Hb_001189_050--Hb_000019_060 Hb_001493_180 Hb_001493_180 Hb_001189_050--Hb_001493_180 Hb_010608_050 Hb_010608_050 Hb_001189_050--Hb_010608_050 Hb_025557_030 Hb_025557_030 Hb_001189_050--Hb_025557_030 Hb_092107_010--Hb_001014_230 Hb_092107_010--Hb_004056_030 Hb_114336_020 Hb_114336_020 Hb_092107_010--Hb_114336_020 Hb_000260_570 Hb_000260_570 Hb_092107_010--Hb_000260_570 Hb_002182_030 Hb_002182_030 Hb_092107_010--Hb_002182_030 Hb_011030_020--Hb_005162_070 Hb_011030_020--Hb_010608_050 Hb_002205_130 Hb_002205_130 Hb_011030_020--Hb_002205_130 Hb_008695_100 Hb_008695_100 Hb_011030_020--Hb_008695_100 Hb_000617_150 Hb_000617_150 Hb_011030_020--Hb_000617_150 Hb_002027_040 Hb_002027_040 Hb_005162_070--Hb_002027_040 Hb_005162_070--Hb_000260_570 Hb_005162_070--Hb_008695_100 Hb_001140_220 Hb_001140_220 Hb_005162_070--Hb_001140_220 Hb_013607_040 Hb_013607_040 Hb_005162_070--Hb_013607_040 Hb_000432_050 Hb_000432_050 Hb_029510_040--Hb_000432_050 Hb_002756_020 Hb_002756_020 Hb_029510_040--Hb_002756_020 Hb_029510_040--Hb_001189_050 Hb_012799_100 Hb_012799_100 Hb_029510_040--Hb_012799_100 Hb_000723_190 Hb_000723_190 Hb_029510_040--Hb_000723_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.473559 0.401442 0.09501 0.356637 0.235519 0.55332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.13566 1.56207 2.61827 0.760705 1.01453

CAGE analysis