Hb_001294_010

Information

Type -
Description -
Location Contig1294: 53969-57673
Sequence    

Annotation

kegg
ID cit:102613940
description E3 ubiquitin-protein ligase RNF170-like
nr
ID XP_012085009.1
description PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JVY1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22198 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase rnf170-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001294_010 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
2 Hb_092107_010 0.0947875115 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001014_230 0.09653703 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Jatropha curcas]
4 Hb_001357_010 0.1046948534 - - -
5 Hb_003294_100 0.1162632401 - - hypothetical protein VITISV_009629 [Vitis vinifera]
6 Hb_002307_170 0.1243465454 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
7 Hb_004056_030 0.1296775299 - - hypothetical protein 33 [Hevea brasiliensis]
8 Hb_064441_010 0.1344971357 - - PREDICTED: MACPF domain-containing protein CAD1-like isoform X1 [Jatropha curcas]
9 Hb_114336_020 0.1355338144 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Fragaria vesca subsp. vesca]
10 Hb_009393_210 0.1357546776 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
11 Hb_011534_030 0.138223948 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
12 Hb_001235_030 0.1396937078 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
13 Hb_011537_110 0.1405172969 - - hypothetical protein PRUPE_ppa013160mg [Prunus persica]
14 Hb_001073_050 0.1405563394 - - -
15 Hb_003117_010 0.1409225962 - - PREDICTED: uncharacterized protein LOC100259103 isoform X1 [Vitis vinifera]
16 Hb_001006_260 0.1459378063 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
17 Hb_000329_180 0.1460572794 - - Auxin-induced protein X10A, putative [Ricinus communis]
18 Hb_027625_010 0.1467005042 - - PREDICTED: protein sym-1-like [Jatropha curcas]
19 Hb_013607_040 0.1468111713 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Jatropha curcas]
20 Hb_001189_050 0.1482043547 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Jatropha curcas]

Gene co-expression network

sample Hb_001294_010 Hb_001294_010 Hb_092107_010 Hb_092107_010 Hb_001294_010--Hb_092107_010 Hb_001014_230 Hb_001014_230 Hb_001294_010--Hb_001014_230 Hb_001357_010 Hb_001357_010 Hb_001294_010--Hb_001357_010 Hb_003294_100 Hb_003294_100 Hb_001294_010--Hb_003294_100 Hb_002307_170 Hb_002307_170 Hb_001294_010--Hb_002307_170 Hb_004056_030 Hb_004056_030 Hb_001294_010--Hb_004056_030 Hb_092107_010--Hb_001014_230 Hb_092107_010--Hb_004056_030 Hb_114336_020 Hb_114336_020 Hb_092107_010--Hb_114336_020 Hb_000260_570 Hb_000260_570 Hb_092107_010--Hb_000260_570 Hb_002182_030 Hb_002182_030 Hb_092107_010--Hb_002182_030 Hb_001235_030 Hb_001235_030 Hb_001014_230--Hb_001235_030 Hb_001014_230--Hb_114336_020 Hb_011534_030 Hb_011534_030 Hb_001014_230--Hb_011534_030 Hb_001014_230--Hb_002307_170 Hb_013607_040 Hb_013607_040 Hb_001014_230--Hb_013607_040 Hb_001189_050 Hb_001189_050 Hb_001357_010--Hb_001189_050 Hb_001357_010--Hb_092107_010 Hb_011030_020 Hb_011030_020 Hb_001357_010--Hb_011030_020 Hb_005162_070 Hb_005162_070 Hb_001357_010--Hb_005162_070 Hb_029510_040 Hb_029510_040 Hb_001357_010--Hb_029510_040 Hb_003117_010 Hb_003117_010 Hb_003294_100--Hb_003117_010 Hb_009393_210 Hb_009393_210 Hb_003294_100--Hb_009393_210 Hb_000648_020 Hb_000648_020 Hb_003294_100--Hb_000648_020 Hb_012490_050 Hb_012490_050 Hb_003294_100--Hb_012490_050 Hb_003294_100--Hb_001014_230 Hb_002307_170--Hb_013607_040 Hb_004846_070 Hb_004846_070 Hb_002307_170--Hb_004846_070 Hb_002307_170--Hb_011534_030 Hb_000479_140 Hb_000479_140 Hb_002307_170--Hb_000479_140 Hb_000471_110 Hb_000471_110 Hb_002307_170--Hb_000471_110 Hb_004056_030--Hb_114336_020 Hb_001073_050 Hb_001073_050 Hb_004056_030--Hb_001073_050 Hb_004056_030--Hb_000260_570 Hb_064441_010 Hb_064441_010 Hb_004056_030--Hb_064441_010 Hb_006472_050 Hb_006472_050 Hb_004056_030--Hb_006472_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.76131 1.05382 0.485518 1.84275 1.01139 5.12258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.83106 7.04859 10.7287 3.1486 4.95017

CAGE analysis