Hb_064441_010

Information

Type -
Description -
Location Contig64441: 6564-18676
Sequence    

Annotation

kegg
ID pop:POPTR_0006s10840g
description POPTRDRAFT_560983; hypothetical protein
nr
ID XP_012089688.1
description PREDICTED: MACPF domain-containing protein CAD1-like isoform X1 [Jatropha curcas]
swissprot
ID Q9C7N2
description MACPF domain-containing protein CAD1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1
trembl
ID A0A067JG18
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00359 PE=4 SV=1
Gene Ontology
ID GO:0005622
description macpf domain-containing protein cad1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52228: 6633-6830 , PASA_asmbl_52229: 6959-12481
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_064441_010 0.0 - - PREDICTED: MACPF domain-containing protein CAD1-like isoform X1 [Jatropha curcas]
2 Hb_001235_030 0.0825171162 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
3 Hb_002005_020 0.0889780077 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006429_010 0.0932827166 - - PREDICTED: uncharacterized protein LOC105639724 [Jatropha curcas]
5 Hb_000482_090 0.0942420737 - - PREDICTED: uncharacterized protein LOC105638145 [Jatropha curcas]
6 Hb_010436_060 0.09590373 - - hypothetical protein CISIN_1g0003801mg, partial [Citrus sinensis]
7 Hb_004079_030 0.0959349458 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
8 Hb_000898_050 0.0960166119 - - -
9 Hb_011534_030 0.1000178713 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
10 Hb_004056_030 0.1015962078 - - hypothetical protein 33 [Hevea brasiliensis]
11 Hb_001014_230 0.1034710616 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Jatropha curcas]
12 Hb_001073_050 0.1040809349 - - -
13 Hb_005625_020 0.1044881523 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 [Jatropha curcas]
14 Hb_005092_060 0.1047773439 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
15 Hb_004218_110 0.1057615442 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
16 Hb_006641_010 0.1058048569 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
17 Hb_114336_020 0.1074873835 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Fragaria vesca subsp. vesca]
18 Hb_000072_180 0.1094298786 - - PREDICTED: EVI5-like protein [Jatropha curcas]
19 Hb_000023_090 0.1112130455 - - mak, putative [Ricinus communis]
20 Hb_002759_060 0.1118298489 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]

Gene co-expression network

sample Hb_064441_010 Hb_064441_010 Hb_001235_030 Hb_001235_030 Hb_064441_010--Hb_001235_030 Hb_002005_020 Hb_002005_020 Hb_064441_010--Hb_002005_020 Hb_006429_010 Hb_006429_010 Hb_064441_010--Hb_006429_010 Hb_000482_090 Hb_000482_090 Hb_064441_010--Hb_000482_090 Hb_010436_060 Hb_010436_060 Hb_064441_010--Hb_010436_060 Hb_004079_030 Hb_004079_030 Hb_064441_010--Hb_004079_030 Hb_005092_060 Hb_005092_060 Hb_001235_030--Hb_005092_060 Hb_001014_230 Hb_001014_230 Hb_001235_030--Hb_001014_230 Hb_114336_020 Hb_114336_020 Hb_001235_030--Hb_114336_020 Hb_008554_070 Hb_008554_070 Hb_001235_030--Hb_008554_070 Hb_011534_030 Hb_011534_030 Hb_001235_030--Hb_011534_030 Hb_002016_120 Hb_002016_120 Hb_001235_030--Hb_002016_120 Hb_004218_110 Hb_004218_110 Hb_002005_020--Hb_004218_110 Hb_000023_090 Hb_000023_090 Hb_002005_020--Hb_000023_090 Hb_002759_060 Hb_002759_060 Hb_002005_020--Hb_002759_060 Hb_011953_020 Hb_011953_020 Hb_002005_020--Hb_011953_020 Hb_000567_120 Hb_000567_120 Hb_002005_020--Hb_000567_120 Hb_001519_050 Hb_001519_050 Hb_002005_020--Hb_001519_050 Hb_000479_190 Hb_000479_190 Hb_006429_010--Hb_000479_190 Hb_003092_030 Hb_003092_030 Hb_006429_010--Hb_003092_030 Hb_001205_150 Hb_001205_150 Hb_006429_010--Hb_001205_150 Hb_006429_010--Hb_004218_110 Hb_006429_010--Hb_002759_060 Hb_037887_010 Hb_037887_010 Hb_006429_010--Hb_037887_010 Hb_000482_090--Hb_002005_020 Hb_000482_090--Hb_004218_110 Hb_001959_210 Hb_001959_210 Hb_000482_090--Hb_001959_210 Hb_000482_090--Hb_002759_060 Hb_004254_120 Hb_004254_120 Hb_000482_090--Hb_004254_120 Hb_172932_010 Hb_172932_010 Hb_000482_090--Hb_172932_010 Hb_006641_010 Hb_006641_010 Hb_010436_060--Hb_006641_010 Hb_003964_100 Hb_003964_100 Hb_010436_060--Hb_003964_100 Hb_011671_220 Hb_011671_220 Hb_010436_060--Hb_011671_220 Hb_010436_060--Hb_001235_030 Hb_001073_050 Hb_001073_050 Hb_010436_060--Hb_001073_050 Hb_005117_010 Hb_005117_010 Hb_010436_060--Hb_005117_010 Hb_000138_110 Hb_000138_110 Hb_004079_030--Hb_000138_110 Hb_002027_040 Hb_002027_040 Hb_004079_030--Hb_002027_040 Hb_001811_030 Hb_001811_030 Hb_004079_030--Hb_001811_030 Hb_000059_050 Hb_000059_050 Hb_004079_030--Hb_000059_050 Hb_004079_030--Hb_002005_020 Hb_119600_070 Hb_119600_070 Hb_004079_030--Hb_119600_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.96951 4.73825 4.51132 12.0258 7.69102 21.007
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.6307 18.8643 34.5555 14.782 11.6245

CAGE analysis