Hb_002374_300

Information

Type -
Description -
Location Contig2374: 247684-252912
Sequence    

Annotation

kegg
ID pop:POPTR_0005s20140g
description POPTRDRAFT_209946; hypothetical protein
nr
ID KDP32848.1
description hypothetical protein JCGZ_12140 [Jatropha curcas]
swissprot
ID Q42593
description L-ascorbate peroxidase T, chloroplastic OS=Arabidopsis thaliana GN=APXT PE=2 SV=2
trembl
ID A0A067KCW4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12140 PE=3 SV=1
Gene Ontology
ID GO:0009507
description probable l-ascorbate peroxidase chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24888: 247676-252899 , PASA_asmbl_24889: 252287-252632
cDNA
(Sanger)
(ID:Location)		 032_O08.ab1: 247676-250511 , 033_P12.ab1: 247660-250349

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_300 0.0 - - hypothetical protein JCGZ_12140 [Jatropha curcas]
2 Hb_001124_180 0.0998176419 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
3 Hb_000627_300 0.1122523545 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
4 Hb_000176_010 0.1167569404 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
5 Hb_005489_090 0.1237593142 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
6 Hb_004128_070 0.1308176659 - - PREDICTED: thioredoxin-like protein AAED1, chloroplastic [Jatropha curcas]
7 Hb_009780_050 0.1342338031 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
8 Hb_003935_080 0.1402685701 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
9 Hb_000723_340 0.1417645356 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Jatropha curcas]
10 Hb_000042_290 0.1468100003 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
11 Hb_001124_190 0.1477702909 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000032_140 0.1495481634 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000718_040 0.1498879111 - - PREDICTED: lipase member N [Jatropha curcas]
14 Hb_005846_030 0.1524206286 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
15 Hb_000510_030 0.1527797271 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
16 Hb_005725_220 0.1551405156 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
17 Hb_004317_030 0.1554465334 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
18 Hb_065525_120 0.1558151784 - - dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]
19 Hb_000991_020 0.1559869856 - - amino acid transporter, putative [Ricinus communis]
20 Hb_000032_370 0.1561277438 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]

Gene co-expression network

sample Hb_002374_300 Hb_002374_300 Hb_001124_180 Hb_001124_180 Hb_002374_300--Hb_001124_180 Hb_000627_300 Hb_000627_300 Hb_002374_300--Hb_000627_300 Hb_000176_010 Hb_000176_010 Hb_002374_300--Hb_000176_010 Hb_005489_090 Hb_005489_090 Hb_002374_300--Hb_005489_090 Hb_004128_070 Hb_004128_070 Hb_002374_300--Hb_004128_070 Hb_009780_050 Hb_009780_050 Hb_002374_300--Hb_009780_050 Hb_001124_180--Hb_005489_090 Hb_003935_080 Hb_003935_080 Hb_001124_180--Hb_003935_080 Hb_005725_220 Hb_005725_220 Hb_001124_180--Hb_005725_220 Hb_000042_290 Hb_000042_290 Hb_001124_180--Hb_000042_290 Hb_000594_100 Hb_000594_100 Hb_001124_180--Hb_000594_100 Hb_001124_180--Hb_000176_010 Hb_000627_300--Hb_001124_180 Hb_000627_300--Hb_000176_010 Hb_000627_300--Hb_005489_090 Hb_002150_130 Hb_002150_130 Hb_000627_300--Hb_002150_130 Hb_005846_030 Hb_005846_030 Hb_000627_300--Hb_005846_030 Hb_000176_010--Hb_009780_050 Hb_000176_010--Hb_000042_290 Hb_000176_010--Hb_002150_130 Hb_000167_050 Hb_000167_050 Hb_000176_010--Hb_000167_050 Hb_005489_090--Hb_003935_080 Hb_005489_090--Hb_000594_100 Hb_010577_040 Hb_010577_040 Hb_005489_090--Hb_010577_040 Hb_005489_090--Hb_005725_220 Hb_001792_030 Hb_001792_030 Hb_005489_090--Hb_001792_030 Hb_000032_370 Hb_000032_370 Hb_004128_070--Hb_000032_370 Hb_001399_010 Hb_001399_010 Hb_004128_070--Hb_001399_010 Hb_004128_070--Hb_005846_030 Hb_010422_070 Hb_010422_070 Hb_004128_070--Hb_010422_070 Hb_065525_120 Hb_065525_120 Hb_004128_070--Hb_065525_120 Hb_001711_120 Hb_001711_120 Hb_009780_050--Hb_001711_120 Hb_009780_050--Hb_000167_050 Hb_009780_050--Hb_065525_120 Hb_002053_010 Hb_002053_010 Hb_009780_050--Hb_002053_010 Hb_009780_050--Hb_001124_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.32304 2.05064 31.3625 18.4132 1.89039 1.71684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.1274 23.7924 12.9465 7.62692 41.5948

CAGE analysis