Hb_065525_120

Information

Type -
Description -
Location Contig65525: 105977-110476
Sequence    

Annotation

kegg
ID rcu:RCOM_0464520
description dtdp-glucose 4-6-dehydratase, putative (EC:4.1.1.35)
nr
ID XP_002528436.1
description dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]
swissprot
ID Q9ZV36
description UDP-glucuronic acid decarboxylase 6 OS=Arabidopsis thaliana GN=UXS6 PE=2 SV=1
trembl
ID B9SR17
description Dtdp-glucose 4-6-dehydratase, putative OS=Ricinus communis GN=RCOM_0464520 PE=4 SV=1
Gene Ontology
ID GO:0008460
description udp-glucuronic acid decarboxylase 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52681: 106059-110471
cDNA
(Sanger)
(ID:Location)		 017_G18.ab1: 106059-109048 , 022_O09.ab1: 107668-108499 , 028_C24.ab1: 106059-109280 , 046_D14.ab1: 106065-109284

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065525_120 0.0 - - dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]
2 Hb_000032_370 0.090088156 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
3 Hb_027298_010 0.1139545411 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009780_050 0.1141727131 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
5 Hb_154038_020 0.1183923267 - - hypothetical protein JCGZ_05648 [Jatropha curcas]
6 Hb_001671_030 0.1207745803 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
7 Hb_007441_080 0.1226547173 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
8 Hb_004317_030 0.1230835356 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
9 Hb_002045_060 0.1258046367 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
10 Hb_003602_060 0.1258995751 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
11 Hb_000392_550 0.1265685321 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_004128_070 0.1284507155 - - PREDICTED: thioredoxin-like protein AAED1, chloroplastic [Jatropha curcas]
13 Hb_001486_250 0.1290703068 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
14 Hb_000394_180 0.1291422401 - - PREDICTED: uncharacterized protein LOC105636995 [Jatropha curcas]
15 Hb_019762_050 0.1325071462 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
16 Hb_001711_120 0.1341904886 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
17 Hb_000012_110 0.1347439218 - - hypothetical protein CICLE_v10008613mg [Citrus clementina]
18 Hb_007192_030 0.1348882951 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
19 Hb_001301_340 0.1356896078 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
20 Hb_000008_400 0.1364243184 - - PREDICTED: classical arabinogalactan protein 10-like [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_065525_120 Hb_065525_120 Hb_000032_370 Hb_000032_370 Hb_065525_120--Hb_000032_370 Hb_027298_010 Hb_027298_010 Hb_065525_120--Hb_027298_010 Hb_009780_050 Hb_009780_050 Hb_065525_120--Hb_009780_050 Hb_154038_020 Hb_154038_020 Hb_065525_120--Hb_154038_020 Hb_001671_030 Hb_001671_030 Hb_065525_120--Hb_001671_030 Hb_007441_080 Hb_007441_080 Hb_065525_120--Hb_007441_080 Hb_004317_030 Hb_004317_030 Hb_000032_370--Hb_004317_030 Hb_000392_550 Hb_000392_550 Hb_000032_370--Hb_000392_550 Hb_002045_060 Hb_002045_060 Hb_000032_370--Hb_002045_060 Hb_000510_030 Hb_000510_030 Hb_000032_370--Hb_000510_030 Hb_000428_060 Hb_000428_060 Hb_000032_370--Hb_000428_060 Hb_019762_050 Hb_019762_050 Hb_027298_010--Hb_019762_050 Hb_027298_010--Hb_000392_550 Hb_027298_010--Hb_000032_370 Hb_140627_010 Hb_140627_010 Hb_027298_010--Hb_140627_010 Hb_027298_010--Hb_009780_050 Hb_000176_010 Hb_000176_010 Hb_009780_050--Hb_000176_010 Hb_001711_120 Hb_001711_120 Hb_009780_050--Hb_001711_120 Hb_000167_050 Hb_000167_050 Hb_009780_050--Hb_000167_050 Hb_002053_010 Hb_002053_010 Hb_009780_050--Hb_002053_010 Hb_001124_180 Hb_001124_180 Hb_009780_050--Hb_001124_180 Hb_003602_060 Hb_003602_060 Hb_154038_020--Hb_003602_060 Hb_001767_060 Hb_001767_060 Hb_154038_020--Hb_001767_060 Hb_154038_020--Hb_009780_050 Hb_001904_050 Hb_001904_050 Hb_154038_020--Hb_001904_050 Hb_093458_010 Hb_093458_010 Hb_154038_020--Hb_093458_010 Hb_005016_040 Hb_005016_040 Hb_001671_030--Hb_005016_040 Hb_007192_030 Hb_007192_030 Hb_001671_030--Hb_007192_030 Hb_001754_080 Hb_001754_080 Hb_001671_030--Hb_001754_080 Hb_011606_020 Hb_011606_020 Hb_001671_030--Hb_011606_020 Hb_002677_020 Hb_002677_020 Hb_001671_030--Hb_002677_020 Hb_002110_100 Hb_002110_100 Hb_007441_080--Hb_002110_100 Hb_000742_020 Hb_000742_020 Hb_007441_080--Hb_000742_020 Hb_000684_030 Hb_000684_030 Hb_007441_080--Hb_000684_030 Hb_007441_080--Hb_003602_060 Hb_000590_120 Hb_000590_120 Hb_007441_080--Hb_000590_120 Hb_003875_030 Hb_003875_030 Hb_007441_080--Hb_003875_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3379 23.3071 73.4377 78.0894 9.68741 6.856
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.53 79.8623 55.7568 22.0424 86.5913

CAGE analysis