Hb_019762_050

Information

Type transcription factor
Description TF Family: CSD
Location Contig19762: 42599-44102
Sequence    

Annotation

kegg
ID rcu:RCOM_1031420
description cold shock protein, putative
nr
ID XP_012078181.1
description PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
swissprot
ID Q94C69
description Cold shock domain-containing protein 3 OS=Arabidopsis thaliana GN=CSP3 PE=1 SV=1
trembl
ID A0A067K979
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12058 PE=4 SV=1
Gene Ontology
ID GO:0003677
description glycine-rich protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19877: 43653-43947
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019762_050 0.0 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
2 Hb_027298_010 0.0664319888 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000457_290 0.1085779443 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
4 Hb_000403_070 0.1178061338 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000032_370 0.1191551488 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
6 Hb_140627_010 0.1199202365 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001575_060 0.1219135226 - - PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Jatropha curcas]
8 Hb_000392_550 0.1243807222 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000056_070 0.1299537917 - - -
10 Hb_065525_120 0.1325071462 - - dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]
11 Hb_004128_070 0.1340085352 - - PREDICTED: thioredoxin-like protein AAED1, chloroplastic [Jatropha curcas]
12 Hb_002876_020 0.1351281704 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
13 Hb_000140_270 0.1377618291 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
14 Hb_001892_070 0.1384789382 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
15 Hb_007741_100 0.1399858542 transcription factor TF Family: GRAS PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6 [Jatropha curcas]
16 Hb_004317_030 0.1401045798 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
17 Hb_000005_300 0.1414237616 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001240_010 0.1422324694 - - PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]
19 Hb_001252_220 0.1432485844 - - PREDICTED: uncharacterized protein LOC105640647 [Jatropha curcas]
20 Hb_001979_020 0.1467497261 - - hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_019762_050 Hb_019762_050 Hb_027298_010 Hb_027298_010 Hb_019762_050--Hb_027298_010 Hb_000457_290 Hb_000457_290 Hb_019762_050--Hb_000457_290 Hb_000403_070 Hb_000403_070 Hb_019762_050--Hb_000403_070 Hb_000032_370 Hb_000032_370 Hb_019762_050--Hb_000032_370 Hb_140627_010 Hb_140627_010 Hb_019762_050--Hb_140627_010 Hb_001575_060 Hb_001575_060 Hb_019762_050--Hb_001575_060 Hb_000392_550 Hb_000392_550 Hb_027298_010--Hb_000392_550 Hb_027298_010--Hb_000032_370 Hb_065525_120 Hb_065525_120 Hb_027298_010--Hb_065525_120 Hb_027298_010--Hb_140627_010 Hb_009780_050 Hb_009780_050 Hb_027298_010--Hb_009780_050 Hb_000465_070 Hb_000465_070 Hb_000457_290--Hb_000465_070 Hb_000035_480 Hb_000035_480 Hb_000457_290--Hb_000035_480 Hb_000457_290--Hb_140627_010 Hb_000457_290--Hb_000403_070 Hb_001892_070 Hb_001892_070 Hb_000457_290--Hb_001892_070 Hb_002232_060 Hb_002232_060 Hb_000457_290--Hb_002232_060 Hb_006846_150 Hb_006846_150 Hb_000403_070--Hb_006846_150 Hb_000403_070--Hb_140627_010 Hb_000403_070--Hb_001575_060 Hb_001240_010 Hb_001240_010 Hb_000403_070--Hb_001240_010 Hb_000403_070--Hb_000465_070 Hb_004317_030 Hb_004317_030 Hb_000032_370--Hb_004317_030 Hb_000032_370--Hb_000392_550 Hb_000032_370--Hb_065525_120 Hb_002045_060 Hb_002045_060 Hb_000032_370--Hb_002045_060 Hb_000510_030 Hb_000510_030 Hb_000032_370--Hb_000510_030 Hb_000428_060 Hb_000428_060 Hb_000032_370--Hb_000428_060 Hb_140627_010--Hb_000035_480 Hb_140627_010--Hb_001240_010 Hb_140627_010--Hb_006846_150 Hb_140627_010--Hb_000392_550 Hb_003050_250 Hb_003050_250 Hb_001575_060--Hb_003050_250 Hb_001728_060 Hb_001728_060 Hb_001575_060--Hb_001728_060 Hb_001575_060--Hb_001240_010 Hb_000107_150 Hb_000107_150 Hb_001575_060--Hb_000107_150 Hb_001575_060--Hb_001892_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.75698 1.86333 7.24882 8.65432 1.81944 1.38889
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.94787 18.8575 8.80827 4.03007 14.7762

CAGE analysis