Hb_001767_060

Information

Type -
Description -
Location Contig1767: 53176-66175
Sequence    

Annotation

kegg
ID pop:POPTR_0008s04930g
description POPTRDRAFT_419822; hypothetical protein
nr
ID XP_012072934.1
description PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FY46
description Sulfate transporter 4.1, chloroplastic OS=Arabidopsis thaliana GN=SULTR4;1 PE=1 SV=1
trembl
ID A0A067LC61
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06587 PE=4 SV=1
Gene Ontology
ID GO:0016021
description sulfate transporter chloroplastic-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16954: 53173-66035 , PASA_asmbl_16956: 57469-66003
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001767_060 0.0 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
2 Hb_093458_010 0.1136320791 - - hypothetical protein CISIN_1g0277592mg [Citrus sinensis]
3 Hb_154038_020 0.1136762754 - - hypothetical protein JCGZ_05648 [Jatropha curcas]
4 Hb_003602_060 0.1323936391 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
5 Hb_001450_030 0.1331786408 - - PREDICTED: uncharacterized protein LOC105650827 [Jatropha curcas]
6 Hb_015807_160 0.1378068275 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
7 Hb_052764_070 0.1397319106 - - PREDICTED: uncharacterized protein LOC105649473 [Jatropha curcas]
8 Hb_133799_010 0.1555811263 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004984_030 0.1562674429 - - protein with unknown function [Ricinus communis]
10 Hb_040819_010 0.1562786141 - - protein phosphatase 2c, putative [Ricinus communis]
11 Hb_065525_120 0.1566021898 - - dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]
12 Hb_001863_070 0.159510964 - - Queuine tRNA-ribosyltransferase [Theobroma cacao]
13 Hb_002909_020 0.1615553366 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
14 Hb_009780_050 0.1621826604 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
15 Hb_005460_060 0.1627986474 - - PREDICTED: proteasome assembly chaperone 2 [Jatropha curcas]
16 Hb_101146_010 0.1628531777 - - PREDICTED: peregrin-like [Jatropha curcas]
17 Hb_011242_050 0.1644388126 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa [Jatropha curcas]
18 Hb_003462_160 0.1647021196 transcription factor TF Family: GNAT predicted protein [Arabidopsis lyrata subsp. lyrata]
19 Hb_000008_370 0.1653142912 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
20 Hb_000256_080 0.1654351411 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]

Gene co-expression network

sample Hb_001767_060 Hb_001767_060 Hb_093458_010 Hb_093458_010 Hb_001767_060--Hb_093458_010 Hb_154038_020 Hb_154038_020 Hb_001767_060--Hb_154038_020 Hb_003602_060 Hb_003602_060 Hb_001767_060--Hb_003602_060 Hb_001450_030 Hb_001450_030 Hb_001767_060--Hb_001450_030 Hb_015807_160 Hb_015807_160 Hb_001767_060--Hb_015807_160 Hb_052764_070 Hb_052764_070 Hb_001767_060--Hb_052764_070 Hb_093458_010--Hb_003602_060 Hb_093458_010--Hb_015807_160 Hb_040819_010 Hb_040819_010 Hb_093458_010--Hb_040819_010 Hb_001863_070 Hb_001863_070 Hb_093458_010--Hb_001863_070 Hb_000645_200 Hb_000645_200 Hb_093458_010--Hb_000645_200 Hb_154038_020--Hb_003602_060 Hb_065525_120 Hb_065525_120 Hb_154038_020--Hb_065525_120 Hb_009780_050 Hb_009780_050 Hb_154038_020--Hb_009780_050 Hb_001904_050 Hb_001904_050 Hb_154038_020--Hb_001904_050 Hb_154038_020--Hb_093458_010 Hb_027506_040 Hb_027506_040 Hb_003602_060--Hb_027506_040 Hb_007441_080 Hb_007441_080 Hb_003602_060--Hb_007441_080 Hb_003602_060--Hb_001863_070 Hb_002007_320 Hb_002007_320 Hb_003602_060--Hb_002007_320 Hb_000008_370 Hb_000008_370 Hb_001450_030--Hb_000008_370 Hb_000390_090 Hb_000390_090 Hb_001450_030--Hb_000390_090 Hb_000152_210 Hb_000152_210 Hb_001450_030--Hb_000152_210 Hb_000176_010 Hb_000176_010 Hb_001450_030--Hb_000176_010 Hb_003181_060 Hb_003181_060 Hb_001450_030--Hb_003181_060 Hb_015807_160--Hb_001863_070 Hb_015807_160--Hb_040819_010 Hb_002028_090 Hb_002028_090 Hb_015807_160--Hb_002028_090 Hb_001114_170 Hb_001114_170 Hb_015807_160--Hb_001114_170 Hb_133799_010 Hb_133799_010 Hb_052764_070--Hb_133799_010 Hb_001307_110 Hb_001307_110 Hb_052764_070--Hb_001307_110 Hb_014508_010 Hb_014508_010 Hb_052764_070--Hb_014508_010 Hb_052764_070--Hb_093458_010 Hb_052764_070--Hb_154038_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.885303 2.32821 7.85708 8.2114 0.571849 0.67137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.62841 8.09695 1.75862 1.41076 4.44676

CAGE analysis