Hb_133799_010

Information

Type -
Description -
Location Contig133799: 10993-12172
Sequence    

Annotation

kegg
ID rcu:RCOM_1674520
description hypothetical protein
nr
ID XP_002509467.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RBD3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1674520 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09516: 11038-12188
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_133799_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_052764_070 0.0926084109 - - PREDICTED: uncharacterized protein LOC105649473 [Jatropha curcas]
3 Hb_001767_060 0.1555811263 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
4 Hb_154038_020 0.1647279755 - - hypothetical protein JCGZ_05648 [Jatropha curcas]
5 Hb_014508_010 0.1666977382 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
6 Hb_001307_110 0.1767079445 - - PREDICTED: uncharacterized protein LOC105644507 [Jatropha curcas]
7 Hb_033152_120 0.1890376174 - - PREDICTED: la-related protein 6C [Jatropha curcas]
8 Hb_003602_060 0.1922407446 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
9 Hb_000116_020 0.1940431465 - - PREDICTED: serine acetyltransferase 2-like isoform X1 [Jatropha curcas]
10 Hb_106552_070 0.1980501032 - - conserved hypothetical protein [Ricinus communis]
11 Hb_093458_010 0.2013020659 - - hypothetical protein CISIN_1g0277592mg [Citrus sinensis]
12 Hb_006889_020 0.2045781459 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
13 Hb_089140_090 0.205894035 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X3 [Beta vulgaris subsp. vulgaris]
14 Hb_065525_120 0.2100741521 - - dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]
15 Hb_000352_200 0.2104801522 - - PREDICTED: OTU domain-containing protein DDB_G0284757 isoform X1 [Jatropha curcas]
16 Hb_000206_230 0.2125934814 - - conserved hypothetical protein [Ricinus communis]
17 Hb_009780_050 0.2135710834 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
18 Hb_031022_020 0.2137164971 - - -
19 Hb_001597_050 0.2142906275 - - -
20 Hb_001408_170 0.2144631041 - - PREDICTED: phosphoglycolate phosphatase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_133799_010 Hb_133799_010 Hb_052764_070 Hb_052764_070 Hb_133799_010--Hb_052764_070 Hb_001767_060 Hb_001767_060 Hb_133799_010--Hb_001767_060 Hb_154038_020 Hb_154038_020 Hb_133799_010--Hb_154038_020 Hb_014508_010 Hb_014508_010 Hb_133799_010--Hb_014508_010 Hb_001307_110 Hb_001307_110 Hb_133799_010--Hb_001307_110 Hb_033152_120 Hb_033152_120 Hb_133799_010--Hb_033152_120 Hb_052764_070--Hb_001767_060 Hb_052764_070--Hb_001307_110 Hb_052764_070--Hb_014508_010 Hb_093458_010 Hb_093458_010 Hb_052764_070--Hb_093458_010 Hb_052764_070--Hb_154038_020 Hb_001767_060--Hb_093458_010 Hb_001767_060--Hb_154038_020 Hb_003602_060 Hb_003602_060 Hb_001767_060--Hb_003602_060 Hb_001450_030 Hb_001450_030 Hb_001767_060--Hb_001450_030 Hb_015807_160 Hb_015807_160 Hb_001767_060--Hb_015807_160 Hb_154038_020--Hb_003602_060 Hb_065525_120 Hb_065525_120 Hb_154038_020--Hb_065525_120 Hb_009780_050 Hb_009780_050 Hb_154038_020--Hb_009780_050 Hb_001904_050 Hb_001904_050 Hb_154038_020--Hb_001904_050 Hb_154038_020--Hb_093458_010 Hb_000740_150 Hb_000740_150 Hb_014508_010--Hb_000740_150 Hb_029977_020 Hb_029977_020 Hb_014508_010--Hb_029977_020 Hb_004052_100 Hb_004052_100 Hb_014508_010--Hb_004052_100 Hb_001408_170 Hb_001408_170 Hb_014508_010--Hb_001408_170 Hb_001250_130 Hb_001250_130 Hb_014508_010--Hb_001250_130 Hb_001307_110--Hb_065525_120 Hb_000879_230 Hb_000879_230 Hb_001307_110--Hb_000879_230 Hb_002320_080 Hb_002320_080 Hb_001307_110--Hb_002320_080 Hb_001307_110--Hb_009780_050 Hb_000365_370 Hb_000365_370 Hb_001307_110--Hb_000365_370 Hb_000032_370 Hb_000032_370 Hb_001307_110--Hb_000032_370 Hb_007441_080 Hb_007441_080 Hb_033152_120--Hb_007441_080 Hb_006889_020 Hb_006889_020 Hb_033152_120--Hb_006889_020 Hb_033152_120--Hb_001904_050 Hb_000256_080 Hb_000256_080 Hb_033152_120--Hb_000256_080 Hb_002007_320 Hb_002007_320 Hb_033152_120--Hb_002007_320 Hb_003549_080 Hb_003549_080 Hb_033152_120--Hb_003549_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.232817 2.49313 13.601 13.8497 0.0881518 0.0400247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.78742 9.41303 3.61072 1.11975 7.44001

CAGE analysis