Hb_002320_080

Information

Type -
Description -
Location Contig2320: 70643-75182
Sequence    

Annotation

kegg
ID pop:POPTR_0001s11880g
description POPTRDRAFT_829403; hypothetical protein
nr
ID XP_012078867.1
description PREDICTED: MLO-like protein 13 isoform X2 [Jatropha curcas]
swissprot
ID Q94KB2
description MLO-like protein 13 OS=Arabidopsis thaliana GN=MLO13 PE=2 SV=1
trembl
ID B9GK27
description MLO-like protein OS=Populus trichocarpa GN=MLO PE=3 SV=2
Gene Ontology
ID GO:0016021
description mlo-like protein 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24402: 71616-72329 , PASA_asmbl_24403: 72390-73551
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002320_080 0.0 - - PREDICTED: MLO-like protein 13 isoform X2 [Jatropha curcas]
2 Hb_000077_200 0.1266049112 - - PREDICTED: thioredoxin [Jatropha curcas]
3 Hb_000946_100 0.1272789392 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
4 Hb_029920_020 0.139610993 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Jatropha curcas]
5 Hb_026889_040 0.1639336389 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
6 Hb_001307_110 0.1669880932 - - PREDICTED: uncharacterized protein LOC105644507 [Jatropha curcas]
7 Hb_015675_030 0.1696457102 - - PREDICTED: UMP-CMP kinase 3 isoform X2 [Jatropha curcas]
8 Hb_000365_370 0.1739409646 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002154_110 0.1740705006 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
10 Hb_000016_170 0.1768393699 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005167_030 0.178294951 - - PREDICTED: serine/threonine-protein kinase At5g01020-like, partial [Camelina sativa]
12 Hb_022593_010 0.1820265908 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
13 Hb_004007_110 0.1870119278 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
14 Hb_001242_080 0.188399219 - - PREDICTED: UDP-galactose transporter 2-like [Populus euphratica]
15 Hb_003103_010 0.1886041934 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005496_090 0.1888869435 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
17 Hb_001454_100 0.1889160057 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
18 Hb_003453_050 0.1919628832 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
19 Hb_006573_290 0.192765203 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
20 Hb_000260_280 0.1930222672 - - auxin:hydrogen symporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_002320_080 Hb_002320_080 Hb_000077_200 Hb_000077_200 Hb_002320_080--Hb_000077_200 Hb_000946_100 Hb_000946_100 Hb_002320_080--Hb_000946_100 Hb_029920_020 Hb_029920_020 Hb_002320_080--Hb_029920_020 Hb_026889_040 Hb_026889_040 Hb_002320_080--Hb_026889_040 Hb_001307_110 Hb_001307_110 Hb_002320_080--Hb_001307_110 Hb_015675_030 Hb_015675_030 Hb_002320_080--Hb_015675_030 Hb_000016_170 Hb_000016_170 Hb_000077_200--Hb_000016_170 Hb_000077_200--Hb_000946_100 Hb_005167_030 Hb_005167_030 Hb_000077_200--Hb_005167_030 Hb_002154_110 Hb_002154_110 Hb_000077_200--Hb_002154_110 Hb_022593_010 Hb_022593_010 Hb_000077_200--Hb_022593_010 Hb_000946_100--Hb_000016_170 Hb_006573_290 Hb_006573_290 Hb_000946_100--Hb_006573_290 Hb_002876_020 Hb_002876_020 Hb_000946_100--Hb_002876_020 Hb_000946_100--Hb_002154_110 Hb_002677_020 Hb_002677_020 Hb_000946_100--Hb_002677_020 Hb_005496_090 Hb_005496_090 Hb_000946_100--Hb_005496_090 Hb_000260_280 Hb_000260_280 Hb_029920_020--Hb_000260_280 Hb_000192_020 Hb_000192_020 Hb_029920_020--Hb_000192_020 Hb_012753_030 Hb_012753_030 Hb_029920_020--Hb_012753_030 Hb_001454_100 Hb_001454_100 Hb_029920_020--Hb_001454_100 Hb_001486_270 Hb_001486_270 Hb_029920_020--Hb_001486_270 Hb_003878_050 Hb_003878_050 Hb_026889_040--Hb_003878_050 Hb_000019_180 Hb_000019_180 Hb_026889_040--Hb_000019_180 Hb_004158_020 Hb_004158_020 Hb_026889_040--Hb_004158_020 Hb_091349_010 Hb_091349_010 Hb_026889_040--Hb_091349_010 Hb_000703_280 Hb_000703_280 Hb_026889_040--Hb_000703_280 Hb_011861_100 Hb_011861_100 Hb_026889_040--Hb_011861_100 Hb_065525_120 Hb_065525_120 Hb_001307_110--Hb_065525_120 Hb_000879_230 Hb_000879_230 Hb_001307_110--Hb_000879_230 Hb_009780_050 Hb_009780_050 Hb_001307_110--Hb_009780_050 Hb_000365_370 Hb_000365_370 Hb_001307_110--Hb_000365_370 Hb_000032_370 Hb_000032_370 Hb_001307_110--Hb_000032_370 Hb_008699_030 Hb_008699_030 Hb_015675_030--Hb_008699_030 Hb_001142_010 Hb_001142_010 Hb_015675_030--Hb_001142_010 Hb_000240_030 Hb_000240_030 Hb_015675_030--Hb_000240_030 Hb_001195_070 Hb_001195_070 Hb_015675_030--Hb_001195_070 Hb_003453_050 Hb_003453_050 Hb_015675_030--Hb_003453_050 Hb_000381_010 Hb_000381_010 Hb_015675_030--Hb_000381_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0858386 0.181889 0.807097 3.84915 0.0876248 0.259071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.904252 2.58479 2.40867 0.917778 2.53333

CAGE analysis