Hb_029920_020

Information

Type -
Description -
Location Contig29920: 27202-31911
Sequence    

Annotation

kegg
ID rcu:RCOM_0225400
description carboxy-lyase, putative
nr
ID XP_012074344.1
description PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Jatropha curcas]
swissprot
ID Q8GW29
description Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 OS=Arabidopsis thaliana GN=LOG7 PE=1 SV=2
trembl
ID A0A067KM99
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08777 PE=4 SV=1
Gene Ontology
ID GO:0005634
description cytokinin riboside 5 -monophosphate phosphoribohydrolase log7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31269: 29889-31848
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029920_020 0.0 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Jatropha curcas]
2 Hb_002320_080 0.139610993 - - PREDICTED: MLO-like protein 13 isoform X2 [Jatropha curcas]
3 Hb_000260_280 0.1661077846 - - auxin:hydrogen symporter, putative [Ricinus communis]
4 Hb_000192_020 0.1782047578 - - hypothetical protein JCGZ_17351 [Jatropha curcas]
5 Hb_012753_030 0.1817552061 - - PREDICTED: probable transcriptional regulator SLK3 [Jatropha curcas]
6 Hb_001454_100 0.1865258543 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
7 Hb_001486_270 0.1911669966 - - Ann10 [Manihot esculenta]
8 Hb_026889_040 0.1940055568 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
9 Hb_000946_100 0.2035399613 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
10 Hb_000077_200 0.2077765601 - - PREDICTED: thioredoxin [Jatropha curcas]
11 Hb_000217_010 0.2079969925 - - hypothetical protein POPTR_0341s00210g [Populus trichocarpa]
12 Hb_002659_030 0.2086502477 - - copper transport protein atox1, putative [Ricinus communis]
13 Hb_000210_100 0.2097802543 - - pepsin A, putative [Ricinus communis]
14 Hb_000382_020 0.2134869495 - - PREDICTED: uncharacterized protein LOC105633610 [Jatropha curcas]
15 Hb_006903_030 0.2173979864 - - PREDICTED: uncharacterized protein LOC105640666 [Jatropha curcas]
16 Hb_002154_110 0.2177711784 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
17 Hb_001307_110 0.2204621046 - - PREDICTED: uncharacterized protein LOC105644507 [Jatropha curcas]
18 Hb_005167_030 0.2217927602 - - PREDICTED: serine/threonine-protein kinase At5g01020-like, partial [Camelina sativa]
19 Hb_003878_050 0.2242496087 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
20 Hb_000258_060 0.2298481162 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_029920_020 Hb_029920_020 Hb_002320_080 Hb_002320_080 Hb_029920_020--Hb_002320_080 Hb_000260_280 Hb_000260_280 Hb_029920_020--Hb_000260_280 Hb_000192_020 Hb_000192_020 Hb_029920_020--Hb_000192_020 Hb_012753_030 Hb_012753_030 Hb_029920_020--Hb_012753_030 Hb_001454_100 Hb_001454_100 Hb_029920_020--Hb_001454_100 Hb_001486_270 Hb_001486_270 Hb_029920_020--Hb_001486_270 Hb_000077_200 Hb_000077_200 Hb_002320_080--Hb_000077_200 Hb_000946_100 Hb_000946_100 Hb_002320_080--Hb_000946_100 Hb_026889_040 Hb_026889_040 Hb_002320_080--Hb_026889_040 Hb_001307_110 Hb_001307_110 Hb_002320_080--Hb_001307_110 Hb_015675_030 Hb_015675_030 Hb_002320_080--Hb_015675_030 Hb_032972_010 Hb_032972_010 Hb_000260_280--Hb_032972_010 Hb_025466_020 Hb_025466_020 Hb_000260_280--Hb_025466_020 Hb_000210_100 Hb_000210_100 Hb_000260_280--Hb_000210_100 Hb_000260_280--Hb_001454_100 Hb_006903_030 Hb_006903_030 Hb_000260_280--Hb_006903_030 Hb_003304_110 Hb_003304_110 Hb_000192_020--Hb_003304_110 Hb_000217_010 Hb_000217_010 Hb_000192_020--Hb_000217_010 Hb_000192_020--Hb_000260_280 Hb_002743_040 Hb_002743_040 Hb_000192_020--Hb_002743_040 Hb_000192_020--Hb_012753_030 Hb_001208_030 Hb_001208_030 Hb_012753_030--Hb_001208_030 Hb_001584_240 Hb_001584_240 Hb_012753_030--Hb_001584_240 Hb_012753_030--Hb_001486_270 Hb_175933_010 Hb_175933_010 Hb_012753_030--Hb_175933_010 Hb_001454_100--Hb_000210_100 Hb_001454_100--Hb_025466_020 Hb_000310_100 Hb_000310_100 Hb_001454_100--Hb_000310_100 Hb_016564_010 Hb_016564_010 Hb_001454_100--Hb_016564_010 Hb_002154_110 Hb_002154_110 Hb_001454_100--Hb_002154_110 Hb_001486_270--Hb_000260_280 Hb_002228_080 Hb_002228_080 Hb_001486_270--Hb_002228_080 Hb_001597_050 Hb_001597_050 Hb_001486_270--Hb_001597_050 Hb_001486_270--Hb_175933_010 Hb_001486_270--Hb_000192_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0501762 0.193795 1.17214 0 0.0789004
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.227304 0.535836 0.617102 0.147243 0.341052

CAGE analysis