Hb_003304_110

Information

Type -
Description -
Location Contig3304: 152965-153657
Sequence    

Annotation

kegg
ID rcu:RCOM_1591900
description hypothetical protein
nr
ID XP_002510272.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O22227
description Protein MIZU-KUSSEI 1 OS=Arabidopsis thaliana GN=MIZ1 PE=1 SV=1
trembl
ID B9R7H9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1591900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34727: 152789-153875 , PASA_asmbl_34728: 152951-154622
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003304_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000192_020 0.1519479661 - - hypothetical protein JCGZ_17351 [Jatropha curcas]
3 Hb_000345_080 0.1784928918 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
4 Hb_020805_140 0.1850949716 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
5 Hb_000094_200 0.1971957821 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000438_120 0.1991112283 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
7 Hb_000107_350 0.2125296504 - - PREDICTED: uncharacterized protein LOC105635576 [Jatropha curcas]
8 Hb_001989_100 0.2173902534 - - PREDICTED: uncharacterized protein LOC105636214 [Jatropha curcas]
9 Hb_005976_010 0.2178412856 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Jatropha curcas]
10 Hb_000742_030 0.2198144436 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
11 Hb_002743_040 0.2215365043 - - PREDICTED: uncharacterized protein LOC105785507 isoform X2 [Gossypium raimondii]
12 Hb_000260_280 0.221906621 - - auxin:hydrogen symporter, putative [Ricinus communis]
13 Hb_008695_220 0.2219665156 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
14 Hb_001486_270 0.228254295 - - Ann10 [Manihot esculenta]
15 Hb_000431_120 0.2297358872 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Jatropha curcas]
16 Hb_001307_110 0.2345460796 - - PREDICTED: uncharacterized protein LOC105644507 [Jatropha curcas]
17 Hb_000496_110 0.2346858135 - - PREDICTED: uncharacterized protein LOC105650214 [Jatropha curcas]
18 Hb_132840_070 0.2370568107 - - metal tolerance protein 1 [Populus trichocarpa x Populus deltoides]
19 Hb_012090_030 0.2378529268 - - PREDICTED: autophagy-related protein 8C isoform X2 [Phoenix dactylifera]
20 Hb_007416_100 0.2389787758 - - PREDICTED: probable xyloglucan glycosyltransferase 5 [Jatropha curcas]

Gene co-expression network

sample Hb_003304_110 Hb_003304_110 Hb_000192_020 Hb_000192_020 Hb_003304_110--Hb_000192_020 Hb_000345_080 Hb_000345_080 Hb_003304_110--Hb_000345_080 Hb_020805_140 Hb_020805_140 Hb_003304_110--Hb_020805_140 Hb_000094_200 Hb_000094_200 Hb_003304_110--Hb_000094_200 Hb_000438_120 Hb_000438_120 Hb_003304_110--Hb_000438_120 Hb_000107_350 Hb_000107_350 Hb_003304_110--Hb_000107_350 Hb_029920_020 Hb_029920_020 Hb_000192_020--Hb_029920_020 Hb_000217_010 Hb_000217_010 Hb_000192_020--Hb_000217_010 Hb_000260_280 Hb_000260_280 Hb_000192_020--Hb_000260_280 Hb_002743_040 Hb_002743_040 Hb_000192_020--Hb_002743_040 Hb_012753_030 Hb_012753_030 Hb_000192_020--Hb_012753_030 Hb_000742_030 Hb_000742_030 Hb_000345_080--Hb_000742_030 Hb_000345_080--Hb_020805_140 Hb_001584_240 Hb_001584_240 Hb_000345_080--Hb_001584_240 Hb_000175_260 Hb_000175_260 Hb_000345_080--Hb_000175_260 Hb_000294_050 Hb_000294_050 Hb_000345_080--Hb_000294_050 Hb_026527_010 Hb_026527_010 Hb_020805_140--Hb_026527_010 Hb_020805_140--Hb_000107_350 Hb_069355_010 Hb_069355_010 Hb_020805_140--Hb_069355_010 Hb_025466_020 Hb_025466_020 Hb_020805_140--Hb_025466_020 Hb_008699_030 Hb_008699_030 Hb_020805_140--Hb_008699_030 Hb_003894_020 Hb_003894_020 Hb_000094_200--Hb_003894_020 Hb_004055_020 Hb_004055_020 Hb_000094_200--Hb_004055_020 Hb_000094_200--Hb_020805_140 Hb_000442_120 Hb_000442_120 Hb_000094_200--Hb_000442_120 Hb_008695_220 Hb_008695_220 Hb_000094_200--Hb_008695_220 Hb_000438_120--Hb_000107_350 Hb_000649_040 Hb_000649_040 Hb_000438_120--Hb_000649_040 Hb_002759_070 Hb_002759_070 Hb_000438_120--Hb_002759_070 Hb_000808_150 Hb_000808_150 Hb_000438_120--Hb_000808_150 Hb_005976_010 Hb_005976_010 Hb_000438_120--Hb_005976_010 Hb_161396_010 Hb_161396_010 Hb_000438_120--Hb_161396_010 Hb_000107_350--Hb_000649_040 Hb_000077_310 Hb_000077_310 Hb_000107_350--Hb_000077_310 Hb_011310_040 Hb_011310_040 Hb_000107_350--Hb_011310_040 Hb_000107_350--Hb_000808_150 Hb_003226_250 Hb_003226_250 Hb_000107_350--Hb_003226_250 Hb_000107_350--Hb_004055_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.93164 17.3661 104.888 0 0.0783882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.5832 26.5737 14.5994 11.4208 52.4909

CAGE analysis