Hb_003894_020

Information

Type -
Description -
Location Contig3894: 11419-14027
Sequence    

Annotation

kegg
ID rcu:RCOM_1612150
description plant sec1, putative
nr
ID XP_002511719.1
description plant sec1, putative [Ricinus communis]
swissprot
ID Q9C5P7
description Protein transport Sec1a OS=Arabidopsis thaliana GN=SEC1A PE=2 SV=3
trembl
ID B9RDD0
description Plant sec1, putative OS=Ricinus communis GN=RCOM_1612150 PE=4 SV=1
Gene Ontology
ID GO:0005623
description protein transport sec1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39018: 11201-20796 , PASA_asmbl_39019: 11227-13808
cDNA
(Sanger)
(ID:Location)		 002_L07.ab1: 11201-14410 , 023_O07.ab1: 11201-13805

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003894_020 0.0 - - plant sec1, putative [Ricinus communis]
2 Hb_000455_070 0.1786728097 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
3 Hb_000094_200 0.1792652524 - - conserved hypothetical protein [Ricinus communis]
4 Hb_122636_010 0.1798467902 - - dienelactone hydrolase family protein [Populus trichocarpa]
5 Hb_001999_100 0.1961549699 - - PREDICTED: UDP-glycosyltransferase 71D1-like [Jatropha curcas]
6 Hb_000796_020 0.1973144528 - - ADP-ribosylation factor [Phaseolus vulgaris]
7 Hb_004162_060 0.2042013397 - - unnamed protein product [Vitis vinifera]
8 Hb_008695_220 0.2058679155 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
9 Hb_032143_020 0.2085822841 - - hypothetical protein POPTR_0009s06310g [Populus trichocarpa]
10 Hb_000671_130 0.2108702303 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
11 Hb_000258_060 0.2117525763 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001217_010 0.2121657368 - - hypothetical protein JCGZ_04022 [Jatropha curcas]
13 Hb_009674_010 0.2153742828 - - AAEL007687-PA [Aedes aegypti]
14 Hb_104571_010 0.2158235523 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
15 Hb_001898_140 0.2176561051 - - hypothetical protein AMTR_s00071p00184460 [Amborella trichopoda]
16 Hb_002110_290 0.2194224641 - - ring finger protein, putative [Ricinus communis]
17 Hb_003207_150 0.2203623981 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
18 Hb_001824_040 0.2218390863 - - hypothetical protein M569_11359, partial [Genlisea aurea]
19 Hb_002582_080 0.2218634001 - - -
20 Hb_000950_030 0.2230834211 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g10290 [Nelumbo nucifera]

Gene co-expression network

sample Hb_003894_020 Hb_003894_020 Hb_000455_070 Hb_000455_070 Hb_003894_020--Hb_000455_070 Hb_000094_200 Hb_000094_200 Hb_003894_020--Hb_000094_200 Hb_122636_010 Hb_122636_010 Hb_003894_020--Hb_122636_010 Hb_001999_100 Hb_001999_100 Hb_003894_020--Hb_001999_100 Hb_000796_020 Hb_000796_020 Hb_003894_020--Hb_000796_020 Hb_004162_060 Hb_004162_060 Hb_003894_020--Hb_004162_060 Hb_003470_110 Hb_003470_110 Hb_000455_070--Hb_003470_110 Hb_005539_140 Hb_005539_140 Hb_000455_070--Hb_005539_140 Hb_030565_100 Hb_030565_100 Hb_000455_070--Hb_030565_100 Hb_002110_290 Hb_002110_290 Hb_000455_070--Hb_002110_290 Hb_000236_180 Hb_000236_180 Hb_000455_070--Hb_000236_180 Hb_001195_090 Hb_001195_090 Hb_000455_070--Hb_001195_090 Hb_004055_020 Hb_004055_020 Hb_000094_200--Hb_004055_020 Hb_020805_140 Hb_020805_140 Hb_000094_200--Hb_020805_140 Hb_003304_110 Hb_003304_110 Hb_000094_200--Hb_003304_110 Hb_000442_120 Hb_000442_120 Hb_000094_200--Hb_000442_120 Hb_008695_220 Hb_008695_220 Hb_000094_200--Hb_008695_220 Hb_006634_110 Hb_006634_110 Hb_122636_010--Hb_006634_110 Hb_000671_130 Hb_000671_130 Hb_122636_010--Hb_000671_130 Hb_002660_110 Hb_002660_110 Hb_122636_010--Hb_002660_110 Hb_003207_150 Hb_003207_150 Hb_122636_010--Hb_003207_150 Hb_001217_010 Hb_001217_010 Hb_122636_010--Hb_001217_010 Hb_100137_010 Hb_100137_010 Hb_122636_010--Hb_100137_010 Hb_001481_150 Hb_001481_150 Hb_001999_100--Hb_001481_150 Hb_006569_060 Hb_006569_060 Hb_001999_100--Hb_006569_060 Hb_001999_100--Hb_002660_110 Hb_033152_070 Hb_033152_070 Hb_001999_100--Hb_033152_070 Hb_000008_190 Hb_000008_190 Hb_001999_100--Hb_000008_190 Hb_026740_020 Hb_026740_020 Hb_001999_100--Hb_026740_020 Hb_000683_100 Hb_000683_100 Hb_000796_020--Hb_000683_100 Hb_000776_060 Hb_000776_060 Hb_000796_020--Hb_000776_060 Hb_030992_010 Hb_030992_010 Hb_000796_020--Hb_030992_010 Hb_000796_020--Hb_122636_010 Hb_004453_070 Hb_004453_070 Hb_000796_020--Hb_004453_070 Hb_000062_090 Hb_000062_090 Hb_000796_020--Hb_000062_090 Hb_069355_010 Hb_069355_010 Hb_004162_060--Hb_069355_010 Hb_001481_130 Hb_001481_130 Hb_004162_060--Hb_001481_130 Hb_001898_140 Hb_001898_140 Hb_004162_060--Hb_001898_140 Hb_003878_050 Hb_003878_050 Hb_004162_060--Hb_003878_050 Hb_126757_010 Hb_126757_010 Hb_004162_060--Hb_126757_010 Hb_000210_100 Hb_000210_100 Hb_004162_060--Hb_000210_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.312261 0.177689 3.03448 0.107269 0.197282
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.514859 0.20225 0.344403 0.335535 0.570327

CAGE analysis