Hb_069355_010

Information

Type -
Description -
Location Contig69355: 5167-7746
Sequence    

Annotation

kegg
ID pop:POPTR_0006s28660g
description POPTRDRAFT_562060; NBS-LRR resistance protein RGH2
nr
ID AAO37646.1
description NBS-LRR resistance protein RGH2 [Manihot esculenta]
swissprot
ID Q7XBQ9
description Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1
trembl
ID Q84XF9
description NBS-LRR resistance protein RGH2 OS=Manihot esculenta PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54516: 5045-5611 , PASA_asmbl_54518: 6879-7131
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_069355_010 0.0 - - NBS-LRR resistance protein RGH2 [Manihot esculenta]
2 Hb_000300_520 0.151552172 - - hypothetical protein JCGZ_02702 [Jatropha curcas]
3 Hb_020805_140 0.154286457 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
4 Hb_000210_100 0.1590447221 - - pepsin A, putative [Ricinus communis]
5 Hb_001481_130 0.1611322896 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001289_020 0.1629436093 - - PREDICTED: uncharacterized protein LOC105635827 [Jatropha curcas]
7 Hb_026527_010 0.1663148921 - - PREDICTED: caffeoylshikimate esterase-like [Populus euphratica]
8 Hb_000671_130 0.1710135402 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
9 Hb_005348_110 0.1712230447 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
10 Hb_011360_110 0.171310843 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
11 Hb_003878_050 0.1717807891 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
12 Hb_025466_020 0.172964252 - - tubulin beta-6 [Brassica oleracea var. italica]
13 Hb_000300_410 0.1757165295 - - hypothetical protein POPTR_0013s05860g [Populus trichocarpa]
14 Hb_008699_030 0.1768449771 - - hypothetical protein CISIN_1g017963mg [Citrus sinensis]
15 Hb_000849_120 0.1771986413 - - PREDICTED: linoleate 9S-lipoxygenase 6-like [Jatropha curcas]
16 Hb_028639_030 0.1774862698 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
17 Hb_000696_070 0.1778196052 - - PREDICTED: aspartic proteinase-like protein 1 [Jatropha curcas]
18 Hb_032143_020 0.1779063136 - - hypothetical protein POPTR_0009s06310g [Populus trichocarpa]
19 Hb_025466_010 0.1788764061 - - unnamed protein product [Vitis vinifera]
20 Hb_001369_630 0.1798569761 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_069355_010 Hb_069355_010 Hb_000300_520 Hb_000300_520 Hb_069355_010--Hb_000300_520 Hb_020805_140 Hb_020805_140 Hb_069355_010--Hb_020805_140 Hb_000210_100 Hb_000210_100 Hb_069355_010--Hb_000210_100 Hb_001481_130 Hb_001481_130 Hb_069355_010--Hb_001481_130 Hb_001289_020 Hb_001289_020 Hb_069355_010--Hb_001289_020 Hb_026527_010 Hb_026527_010 Hb_069355_010--Hb_026527_010 Hb_002129_020 Hb_002129_020 Hb_000300_520--Hb_002129_020 Hb_001195_090 Hb_001195_090 Hb_000300_520--Hb_001195_090 Hb_001999_100 Hb_001999_100 Hb_000300_520--Hb_001999_100 Hb_001216_110 Hb_001216_110 Hb_000300_520--Hb_001216_110 Hb_032143_020 Hb_032143_020 Hb_000300_520--Hb_032143_020 Hb_020805_140--Hb_026527_010 Hb_000107_350 Hb_000107_350 Hb_020805_140--Hb_000107_350 Hb_025466_020 Hb_025466_020 Hb_020805_140--Hb_025466_020 Hb_000345_080 Hb_000345_080 Hb_020805_140--Hb_000345_080 Hb_008699_030 Hb_008699_030 Hb_020805_140--Hb_008699_030 Hb_001454_100 Hb_001454_100 Hb_000210_100--Hb_001454_100 Hb_000210_100--Hb_025466_020 Hb_000260_280 Hb_000260_280 Hb_000210_100--Hb_000260_280 Hb_003878_050 Hb_003878_050 Hb_000210_100--Hb_003878_050 Hb_000210_100--Hb_020805_140 Hb_005348_110 Hb_005348_110 Hb_001481_130--Hb_005348_110 Hb_011139_040 Hb_011139_040 Hb_001481_130--Hb_011139_040 Hb_000849_120 Hb_000849_120 Hb_001481_130--Hb_000849_120 Hb_000465_320 Hb_000465_320 Hb_001481_130--Hb_000465_320 Hb_033413_010 Hb_033413_010 Hb_001481_130--Hb_033413_010 Hb_007925_010 Hb_007925_010 Hb_001289_020--Hb_007925_010 Hb_001289_020--Hb_000210_100 Hb_007534_060 Hb_007534_060 Hb_001289_020--Hb_007534_060 Hb_001289_020--Hb_000300_520 Hb_105959_010 Hb_105959_010 Hb_001289_020--Hb_105959_010 Hb_001329_180 Hb_001329_180 Hb_026527_010--Hb_001329_180 Hb_000696_070 Hb_000696_070 Hb_026527_010--Hb_000696_070 Hb_003470_110 Hb_003470_110 Hb_026527_010--Hb_003470_110 Hb_002701_090 Hb_002701_090 Hb_026527_010--Hb_002701_090 Hb_002781_050 Hb_002781_050 Hb_026527_010--Hb_002781_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.282 1.03661 1.5708 9.41421 0.363376 0.244705
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.49985 0.743879 3.07984 1.64932 4.33977

CAGE analysis