Hb_105959_010

Information

Type -
Description -
Location Contig105959: 404-2547
Sequence    

Annotation

kegg
ID rcu:RCOM_0479760
description asparagine synthetase, putative (EC:6.3.5.4)
nr
ID XP_002526709.1
description asparagine synthetase, putative [Ricinus communis]
swissprot
ID P49078
description Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Arabidopsis thaliana GN=ASN1 PE=2 SV=2
trembl
ID B9SL40
description Asparagine synthetase, putative OS=Ricinus communis GN=RCOM_0479760 PE=4 SV=1
Gene Ontology
ID GO:0004066
description asparagine synthetase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01954: 579-2678 , PASA_asmbl_01956: 2254-2480
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_105959_010 0.0 - - asparagine synthetase, putative [Ricinus communis]
2 Hb_007925_010 0.1542488987 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 1 [Jatropha curcas]
3 Hb_008725_080 0.1629840625 - - PREDICTED: probable galacturonosyltransferase-like 7 [Jatropha curcas]
4 Hb_003813_180 0.1920560516 - - sterol desaturase, putative [Ricinus communis]
5 Hb_001289_020 0.209150788 - - PREDICTED: uncharacterized protein LOC105635827 [Jatropha curcas]
6 Hb_000742_160 0.2095090526 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g20940 [Jatropha curcas]
7 Hb_003408_010 0.2098277835 - - fructokinase [Manihot esculenta]
8 Hb_004147_070 0.21620221 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
9 Hb_001377_430 0.2279751861 - - PREDICTED: laccase-6 [Jatropha curcas]
10 Hb_000098_170 0.232000273 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
11 Hb_103942_030 0.2320096367 - - protein with unknown function [Ricinus communis]
12 Hb_007534_060 0.2323252835 - - protein binding protein, putative [Ricinus communis]
13 Hb_007810_090 0.2342329745 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
14 Hb_004204_110 0.2342572826 - - PREDICTED: UDP-glucose 6-dehydrogenase 1-like [Jatropha curcas]
15 Hb_009748_010 0.2353840592 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
16 Hb_002316_080 0.2367077466 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
17 Hb_002498_030 0.2411779254 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000210_100 0.2412494305 - - pepsin A, putative [Ricinus communis]
19 Hb_008725_070 0.2420279891 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
20 Hb_001450_040 0.2421485652 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]

Gene co-expression network

sample Hb_105959_010 Hb_105959_010 Hb_007925_010 Hb_007925_010 Hb_105959_010--Hb_007925_010 Hb_008725_080 Hb_008725_080 Hb_105959_010--Hb_008725_080 Hb_003813_180 Hb_003813_180 Hb_105959_010--Hb_003813_180 Hb_001289_020 Hb_001289_020 Hb_105959_010--Hb_001289_020 Hb_000742_160 Hb_000742_160 Hb_105959_010--Hb_000742_160 Hb_003408_010 Hb_003408_010 Hb_105959_010--Hb_003408_010 Hb_007925_010--Hb_001289_020 Hb_002316_080 Hb_002316_080 Hb_007925_010--Hb_002316_080 Hb_069355_010 Hb_069355_010 Hb_007925_010--Hb_069355_010 Hb_007416_100 Hb_007416_100 Hb_007925_010--Hb_007416_100 Hb_000246_130 Hb_000246_130 Hb_007925_010--Hb_000246_130 Hb_008725_080--Hb_003408_010 Hb_000328_010 Hb_000328_010 Hb_008725_080--Hb_000328_010 Hb_005144_120 Hb_005144_120 Hb_008725_080--Hb_005144_120 Hb_006153_160 Hb_006153_160 Hb_008725_080--Hb_006153_160 Hb_000108_240 Hb_000108_240 Hb_008725_080--Hb_000108_240 Hb_008279_030 Hb_008279_030 Hb_003813_180--Hb_008279_030 Hb_003813_180--Hb_008725_080 Hb_011004_050 Hb_011004_050 Hb_003813_180--Hb_011004_050 Hb_002662_040 Hb_002662_040 Hb_003813_180--Hb_002662_040 Hb_001488_190 Hb_001488_190 Hb_003813_180--Hb_001488_190 Hb_001289_020--Hb_069355_010 Hb_000210_100 Hb_000210_100 Hb_001289_020--Hb_000210_100 Hb_007534_060 Hb_007534_060 Hb_001289_020--Hb_007534_060 Hb_000300_520 Hb_000300_520 Hb_001289_020--Hb_000300_520 Hb_000244_170 Hb_000244_170 Hb_000742_160--Hb_000244_170 Hb_001008_200 Hb_001008_200 Hb_000742_160--Hb_001008_200 Hb_000765_060 Hb_000765_060 Hb_000742_160--Hb_000765_060 Hb_004088_040 Hb_004088_040 Hb_000742_160--Hb_004088_040 Hb_000197_020 Hb_000197_020 Hb_000742_160--Hb_000197_020 Hb_012760_050 Hb_012760_050 Hb_000742_160--Hb_012760_050 Hb_000932_050 Hb_000932_050 Hb_003408_010--Hb_000932_050 Hb_001450_040 Hb_001450_040 Hb_003408_010--Hb_001450_040 Hb_001401_040 Hb_001401_040 Hb_003408_010--Hb_001401_040 Hb_000023_110 Hb_000023_110 Hb_003408_010--Hb_000023_110 Hb_003408_010--Hb_000108_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.87339 1.3445 10.2774 21.9631 0.827953 0.0311492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.46865 0.529331 7.97262 1.20467 4.3776

CAGE analysis