Hb_000742_160

Information

Type -
Description -
Location Contig742: 140078-143988
Sequence    

Annotation

kegg
ID rcu:RCOM_1337320
description protein binding protein, putative (EC:3.1.3.16)
nr
ID XP_012075610.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g20940 [Jatropha curcas]
swissprot
ID C0LGQ9
description Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1
trembl
ID A0A067KSV1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09212 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at4g20940

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56497: 140884-144220
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000742_160 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g20940 [Jatropha curcas]
2 Hb_000244_170 0.1344074919 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
3 Hb_001008_200 0.1367055314 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC103961552 [Pyrus x bretschneideri]
4 Hb_000765_060 0.1397817897 - - Alcohol dehydrogenase-like 6 [Glycine soja]
5 Hb_004088_040 0.1470302314 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform [Jatropha curcas]
6 Hb_000197_020 0.1521241283 - - PREDICTED: protein RER1A [Jatropha curcas]
7 Hb_012760_050 0.1575546285 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]
8 Hb_007044_090 0.1584204149 - - PREDICTED: isoprenylcysteine alpha-carbonyl methylesterase ICME isoform X2 [Jatropha curcas]
9 Hb_000012_080 0.1584628503 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
10 Hb_003964_080 0.1592304025 - - PREDICTED: probable methyltransferase PMT5 [Jatropha curcas]
11 Hb_000742_020 0.1611953614 - - ARF GTPase activator, putative [Ricinus communis]
12 Hb_013394_050 0.1625585004 - - PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana sylvestris]
13 Hb_011930_150 0.1633211381 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
14 Hb_009748_010 0.1653822862 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
15 Hb_007632_100 0.1656079916 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
16 Hb_000935_040 0.1657448978 - - Uncharacterized protein isoform 2 [Theobroma cacao]
17 Hb_000622_130 0.1659982523 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
18 Hb_003813_060 0.1672063218 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000854_040 0.1680461139 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
20 Hb_000395_110 0.1682256696 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]

Gene co-expression network

sample Hb_000742_160 Hb_000742_160 Hb_000244_170 Hb_000244_170 Hb_000742_160--Hb_000244_170 Hb_001008_200 Hb_001008_200 Hb_000742_160--Hb_001008_200 Hb_000765_060 Hb_000765_060 Hb_000742_160--Hb_000765_060 Hb_004088_040 Hb_004088_040 Hb_000742_160--Hb_004088_040 Hb_000197_020 Hb_000197_020 Hb_000742_160--Hb_000197_020 Hb_012760_050 Hb_012760_050 Hb_000742_160--Hb_012760_050 Hb_003244_020 Hb_003244_020 Hb_000244_170--Hb_003244_020 Hb_000062_330 Hb_000062_330 Hb_000244_170--Hb_000062_330 Hb_013394_050 Hb_013394_050 Hb_000244_170--Hb_013394_050 Hb_007894_010 Hb_007894_010 Hb_000244_170--Hb_007894_010 Hb_002184_090 Hb_002184_090 Hb_000244_170--Hb_002184_090 Hb_000244_170--Hb_000197_020 Hb_011930_150 Hb_011930_150 Hb_001008_200--Hb_011930_150 Hb_000172_510 Hb_000172_510 Hb_001008_200--Hb_000172_510 Hb_024074_020 Hb_024074_020 Hb_001008_200--Hb_024074_020 Hb_007638_020 Hb_007638_020 Hb_001008_200--Hb_007638_020 Hb_001252_090 Hb_001252_090 Hb_001008_200--Hb_001252_090 Hb_008566_040 Hb_008566_040 Hb_000765_060--Hb_008566_040 Hb_000057_110 Hb_000057_110 Hb_000765_060--Hb_000057_110 Hb_000072_300 Hb_000072_300 Hb_000765_060--Hb_000072_300 Hb_011486_060 Hb_011486_060 Hb_000765_060--Hb_011486_060 Hb_000765_060--Hb_000244_170 Hb_000181_350 Hb_000181_350 Hb_000765_060--Hb_000181_350 Hb_004088_040--Hb_000197_020 Hb_001507_120 Hb_001507_120 Hb_004088_040--Hb_001507_120 Hb_001633_200 Hb_001633_200 Hb_004088_040--Hb_001633_200 Hb_000742_020 Hb_000742_020 Hb_004088_040--Hb_000742_020 Hb_000705_230 Hb_000705_230 Hb_004088_040--Hb_000705_230 Hb_000066_030 Hb_000066_030 Hb_004088_040--Hb_000066_030 Hb_000197_020--Hb_000066_030 Hb_003998_040 Hb_003998_040 Hb_000197_020--Hb_003998_040 Hb_004055_120 Hb_004055_120 Hb_000197_020--Hb_004055_120 Hb_000197_020--Hb_000705_230 Hb_010407_140 Hb_010407_140 Hb_000197_020--Hb_010407_140 Hb_011214_160 Hb_011214_160 Hb_000197_020--Hb_011214_160 Hb_012760_050--Hb_013394_050 Hb_019181_030 Hb_019181_030 Hb_012760_050--Hb_019181_030 Hb_048476_060 Hb_048476_060 Hb_012760_050--Hb_048476_060 Hb_000062_090 Hb_000062_090 Hb_012760_050--Hb_000062_090 Hb_001195_410 Hb_001195_410 Hb_012760_050--Hb_001195_410 Hb_002217_500 Hb_002217_500 Hb_012760_050--Hb_002217_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.14063 1.15295 4.3295 7.37889 0.807507 0.756565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.36269 0.857881 2.60767 1.22452 1.37422

CAGE analysis