Hb_001008_200

Information

Type transcription factor
Description TF Family: mTERF
Location Contig1008: 193065-205617
Sequence    

Annotation

kegg
ID pxb:103961552
description uncharacterized LOC103961552
nr
ID XP_009372400.1
description PREDICTED: uncharacterized protein LOC103961552 [Pyrus x bretschneideri]
swissprot
ID -
description -
trembl
ID M5XJ51
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021972mg PE=4 SV=1
Gene Ontology
ID GO:0005739
description rna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001008_200 0.0 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC103961552 [Pyrus x bretschneideri]
2 Hb_011930_150 0.1323833395 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
3 Hb_000742_160 0.1367055314 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g20940 [Jatropha curcas]
4 Hb_000172_510 0.1385989488 - - hypothetical protein B456_007G243100 [Gossypium raimondii]
5 Hb_024074_020 0.139018141 - - PREDICTED: probable serine/threonine-protein kinase At1g09600 [Jatropha curcas]
6 Hb_007638_020 0.1409377133 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
7 Hb_001252_090 0.1448283963 - - GDP-D-mannose pyrophosphorylase [Camellia sinensis]
8 Hb_000953_130 0.1476523855 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]
9 Hb_000002_480 0.1524436695 - - PREDICTED: protein WVD2-like 1 isoform X2 [Jatropha curcas]
10 Hb_003001_090 0.152509024 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
11 Hb_004088_040 0.1532555424 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform [Jatropha curcas]
12 Hb_005535_080 0.1547116176 - - hypothetical protein CICLE_v10012766mg [Citrus clementina]
13 Hb_000038_120 0.1559926706 - - PREDICTED: endoglucanase 9-like [Jatropha curcas]
14 Hb_003910_010 0.1561160475 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
15 Hb_002960_150 0.1568428215 - - hypothetical protein CISIN_1g029215mg [Citrus sinensis]
16 Hb_001051_070 0.1593889763 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
17 Hb_001195_410 0.1607655082 - - PREDICTED: deoxyuridine 5'-triphosphate nucleotidohydrolase [Jatropha curcas]
18 Hb_000622_130 0.1622726446 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
19 Hb_029695_050 0.1661435419 - - PREDICTED: fasciclin-like arabinogalactan protein 1 [Jatropha curcas]
20 Hb_019181_030 0.1661725036 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_001008_200 Hb_001008_200 Hb_011930_150 Hb_011930_150 Hb_001008_200--Hb_011930_150 Hb_000742_160 Hb_000742_160 Hb_001008_200--Hb_000742_160 Hb_000172_510 Hb_000172_510 Hb_001008_200--Hb_000172_510 Hb_024074_020 Hb_024074_020 Hb_001008_200--Hb_024074_020 Hb_007638_020 Hb_007638_020 Hb_001008_200--Hb_007638_020 Hb_001252_090 Hb_001252_090 Hb_001008_200--Hb_001252_090 Hb_029695_050 Hb_029695_050 Hb_011930_150--Hb_029695_050 Hb_001051_070 Hb_001051_070 Hb_011930_150--Hb_001051_070 Hb_135757_010 Hb_135757_010 Hb_011930_150--Hb_135757_010 Hb_009193_090 Hb_009193_090 Hb_011930_150--Hb_009193_090 Hb_000038_120 Hb_000038_120 Hb_011930_150--Hb_000038_120 Hb_000371_090 Hb_000371_090 Hb_011930_150--Hb_000371_090 Hb_000244_170 Hb_000244_170 Hb_000742_160--Hb_000244_170 Hb_000765_060 Hb_000765_060 Hb_000742_160--Hb_000765_060 Hb_004088_040 Hb_004088_040 Hb_000742_160--Hb_004088_040 Hb_000197_020 Hb_000197_020 Hb_000742_160--Hb_000197_020 Hb_012760_050 Hb_012760_050 Hb_000742_160--Hb_012760_050 Hb_002660_150 Hb_002660_150 Hb_000172_510--Hb_002660_150 Hb_000172_510--Hb_001252_090 Hb_000331_370 Hb_000331_370 Hb_000172_510--Hb_000331_370 Hb_000146_040 Hb_000146_040 Hb_000172_510--Hb_000146_040 Hb_000107_080 Hb_000107_080 Hb_000172_510--Hb_000107_080 Hb_000035_200 Hb_000035_200 Hb_000172_510--Hb_000035_200 Hb_002046_150 Hb_002046_150 Hb_024074_020--Hb_002046_150 Hb_000002_480 Hb_000002_480 Hb_024074_020--Hb_000002_480 Hb_002660_110 Hb_002660_110 Hb_024074_020--Hb_002660_110 Hb_012651_010 Hb_012651_010 Hb_024074_020--Hb_012651_010 Hb_024074_020--Hb_000172_510 Hb_000705_230 Hb_000705_230 Hb_007638_020--Hb_000705_230 Hb_001633_200 Hb_001633_200 Hb_007638_020--Hb_001633_200 Hb_003777_200 Hb_003777_200 Hb_007638_020--Hb_003777_200 Hb_007638_020--Hb_001252_090 Hb_000046_500 Hb_000046_500 Hb_007638_020--Hb_000046_500 Hb_000300_600 Hb_000300_600 Hb_007638_020--Hb_000300_600 Hb_001454_230 Hb_001454_230 Hb_001252_090--Hb_001454_230 Hb_002351_030 Hb_002351_030 Hb_001252_090--Hb_002351_030 Hb_001087_030 Hb_001087_030 Hb_001252_090--Hb_001087_030 Hb_000854_040 Hb_000854_040 Hb_001252_090--Hb_000854_040 Hb_001863_360 Hb_001863_360 Hb_001252_090--Hb_001863_360 Hb_000317_040 Hb_000317_040 Hb_001252_090--Hb_000317_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.496671 0.26865 0.630089 1.41212 0.2786 0.191899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.239369 0.263579 0.486577 0.302523 0.154555

CAGE analysis