Hb_002046_150

Information

Type -
Description -
Location Contig2046: 169302-173369
Sequence    

Annotation

kegg
ID rcu:RCOM_1073790
description Protein kinase APK1B, chloroplast precursor, putative (EC:2.7.10.2)
nr
ID XP_012081202.1
description PREDICTED: probable receptor-like protein kinase At5g15080 [Jatropha curcas]
swissprot
ID Q9LFP7
description Probable receptor-like protein kinase At5g15080 OS=Arabidopsis thaliana GN=At5g15080 PE=2 SV=1
trembl
ID A0A067K5H7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17035 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at5g15080

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21079: 169263-173142
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002046_150 0.0 - - PREDICTED: probable receptor-like protein kinase At5g15080 [Jatropha curcas]
2 Hb_024074_020 0.0797942127 - - PREDICTED: probable serine/threonine-protein kinase At1g09600 [Jatropha curcas]
3 Hb_012651_010 0.1409163168 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
4 Hb_000665_190 0.1442546741 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000359_310 0.1451246287 - - hypothetical protein JCGZ_03934 [Jatropha curcas]
6 Hb_000002_480 0.1491416167 - - PREDICTED: protein WVD2-like 1 isoform X2 [Jatropha curcas]
7 Hb_000193_300 0.1521635882 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
8 Hb_002660_110 0.1535779673 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
9 Hb_000890_230 0.1574190362 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
10 Hb_001217_040 0.1601481516 - - hypothetical protein MIMGU_mgv1a0002421mg, partial [Erythranthe guttata]
11 Hb_000984_310 0.1604739027 - - Hydrolase, hydrolyzing O-glycosyl compounds, putative [Theobroma cacao]
12 Hb_005183_170 0.1647304361 - - PREDICTED: pentatricopeptide repeat-containing protein At2g04860 [Jatropha curcas]
13 Hb_009189_020 0.1675406223 - - PREDICTED: CASP-like protein 4B4 [Jatropha curcas]
14 Hb_012339_010 0.1692026616 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000260_600 0.1697359054 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001946_180 0.170108715 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004117_120 0.1706799075 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
18 Hb_026740_020 0.175840829 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
19 Hb_000226_070 0.1763144581 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
20 Hb_107495_040 0.1772325184 - - PREDICTED: 12-oxophytodienoate reductase 2-like [Citrus sinensis]

Gene co-expression network

sample Hb_002046_150 Hb_002046_150 Hb_024074_020 Hb_024074_020 Hb_002046_150--Hb_024074_020 Hb_012651_010 Hb_012651_010 Hb_002046_150--Hb_012651_010 Hb_000665_190 Hb_000665_190 Hb_002046_150--Hb_000665_190 Hb_000359_310 Hb_000359_310 Hb_002046_150--Hb_000359_310 Hb_000002_480 Hb_000002_480 Hb_002046_150--Hb_000002_480 Hb_000193_300 Hb_000193_300 Hb_002046_150--Hb_000193_300 Hb_024074_020--Hb_000002_480 Hb_002660_110 Hb_002660_110 Hb_024074_020--Hb_002660_110 Hb_001008_200 Hb_001008_200 Hb_024074_020--Hb_001008_200 Hb_024074_020--Hb_012651_010 Hb_000172_510 Hb_000172_510 Hb_024074_020--Hb_000172_510 Hb_001946_180 Hb_001946_180 Hb_012651_010--Hb_001946_180 Hb_012651_010--Hb_000002_480 Hb_000890_230 Hb_000890_230 Hb_012651_010--Hb_000890_230 Hb_000429_050 Hb_000429_050 Hb_012651_010--Hb_000429_050 Hb_000140_350 Hb_000140_350 Hb_012651_010--Hb_000140_350 Hb_000984_310 Hb_000984_310 Hb_012651_010--Hb_000984_310 Hb_001049_150 Hb_001049_150 Hb_000665_190--Hb_001049_150 Hb_003994_300 Hb_003994_300 Hb_000665_190--Hb_003994_300 Hb_027445_030 Hb_027445_030 Hb_000665_190--Hb_027445_030 Hb_003746_010 Hb_003746_010 Hb_000665_190--Hb_003746_010 Hb_003540_080 Hb_003540_080 Hb_000665_190--Hb_003540_080 Hb_011926_040 Hb_011926_040 Hb_000665_190--Hb_011926_040 Hb_000370_020 Hb_000370_020 Hb_000359_310--Hb_000370_020 Hb_002289_060 Hb_002289_060 Hb_000359_310--Hb_002289_060 Hb_009661_030 Hb_009661_030 Hb_000359_310--Hb_009661_030 Hb_000359_310--Hb_001946_180 Hb_000062_540 Hb_000062_540 Hb_000359_310--Hb_000062_540 Hb_000256_150 Hb_000256_150 Hb_000359_310--Hb_000256_150 Hb_000331_370 Hb_000331_370 Hb_000002_480--Hb_000331_370 Hb_086639_080 Hb_086639_080 Hb_000002_480--Hb_086639_080 Hb_000002_480--Hb_000890_230 Hb_000139_530 Hb_000139_530 Hb_000002_480--Hb_000139_530 Hb_000371_090 Hb_000371_090 Hb_000002_480--Hb_000371_090 Hb_026740_020 Hb_026740_020 Hb_000193_300--Hb_026740_020 Hb_000413_020 Hb_000413_020 Hb_000193_300--Hb_000413_020 Hb_000193_300--Hb_001946_180 Hb_005977_100 Hb_005977_100 Hb_000193_300--Hb_005977_100 Hb_001347_050 Hb_001347_050 Hb_000193_300--Hb_001347_050 Hb_000085_260 Hb_000085_260 Hb_000193_300--Hb_000085_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.05853 4.95775 5.06523 21.0863 6.98795 3.49431
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.02675 3.29148 6.18018 1.74284 6.23973

CAGE analysis