Hb_024074_020

Information

Type -
Description -
Location Contig24074: 16714-21563
Sequence    

Annotation

kegg
ID pop:POPTR_0004s23550g
description hypothetical protein
nr
ID XP_012066706.1
description PREDICTED: probable serine/threonine-protein kinase At1g09600 [Jatropha curcas]
swissprot
ID F4I114
description Probable serine/threonine-protein kinase At1g09600 OS=Arabidopsis thaliana GN=At1g09600 PE=3 SV=1
trembl
ID A0A067LD90
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00262 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase at1g09600

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25232: 20176-20745 , PASA_asmbl_25233: 20791-21482
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024074_020 0.0 - - PREDICTED: probable serine/threonine-protein kinase At1g09600 [Jatropha curcas]
2 Hb_002046_150 0.0797942127 - - PREDICTED: probable receptor-like protein kinase At5g15080 [Jatropha curcas]
3 Hb_000002_480 0.1238175269 - - PREDICTED: protein WVD2-like 1 isoform X2 [Jatropha curcas]
4 Hb_002660_110 0.1265314926 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
5 Hb_001008_200 0.139018141 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC103961552 [Pyrus x bretschneideri]
6 Hb_012651_010 0.1396057164 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
7 Hb_000172_510 0.1424041294 - - hypothetical protein B456_007G243100 [Gossypium raimondii]
8 Hb_000359_310 0.143080935 - - hypothetical protein JCGZ_03934 [Jatropha curcas]
9 Hb_000890_230 0.1471278843 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
10 Hb_001217_040 0.150959658 - - hypothetical protein MIMGU_mgv1a0002421mg, partial [Erythranthe guttata]
11 Hb_000331_370 0.1515878157 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
12 Hb_004117_120 0.1518037572 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
13 Hb_007632_100 0.1545010211 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
14 Hb_000984_310 0.1589640886 - - Hydrolase, hydrolyzing O-glycosyl compounds, putative [Theobroma cacao]
15 Hb_005535_080 0.1599582878 - - hypothetical protein CICLE_v10012766mg [Citrus clementina]
16 Hb_019181_030 0.1613419637 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
17 Hb_001252_090 0.1614285374 - - GDP-D-mannose pyrophosphorylase [Camellia sinensis]
18 Hb_000107_080 0.1634964725 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
19 Hb_011671_080 0.1637368262 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
20 Hb_000953_130 0.1642637866 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]

Gene co-expression network

sample Hb_024074_020 Hb_024074_020 Hb_002046_150 Hb_002046_150 Hb_024074_020--Hb_002046_150 Hb_000002_480 Hb_000002_480 Hb_024074_020--Hb_000002_480 Hb_002660_110 Hb_002660_110 Hb_024074_020--Hb_002660_110 Hb_001008_200 Hb_001008_200 Hb_024074_020--Hb_001008_200 Hb_012651_010 Hb_012651_010 Hb_024074_020--Hb_012651_010 Hb_000172_510 Hb_000172_510 Hb_024074_020--Hb_000172_510 Hb_002046_150--Hb_012651_010 Hb_000665_190 Hb_000665_190 Hb_002046_150--Hb_000665_190 Hb_000359_310 Hb_000359_310 Hb_002046_150--Hb_000359_310 Hb_002046_150--Hb_000002_480 Hb_000193_300 Hb_000193_300 Hb_002046_150--Hb_000193_300 Hb_000331_370 Hb_000331_370 Hb_000002_480--Hb_000331_370 Hb_086639_080 Hb_086639_080 Hb_000002_480--Hb_086639_080 Hb_000002_480--Hb_012651_010 Hb_000890_230 Hb_000890_230 Hb_000002_480--Hb_000890_230 Hb_000139_530 Hb_000139_530 Hb_000002_480--Hb_000139_530 Hb_000371_090 Hb_000371_090 Hb_000002_480--Hb_000371_090 Hb_003052_180 Hb_003052_180 Hb_002660_110--Hb_003052_180 Hb_000622_350 Hb_000622_350 Hb_002660_110--Hb_000622_350 Hb_122636_010 Hb_122636_010 Hb_002660_110--Hb_122636_010 Hb_000008_190 Hb_000008_190 Hb_002660_110--Hb_000008_190 Hb_003071_070 Hb_003071_070 Hb_002660_110--Hb_003071_070 Hb_001609_040 Hb_001609_040 Hb_002660_110--Hb_001609_040 Hb_011930_150 Hb_011930_150 Hb_001008_200--Hb_011930_150 Hb_000742_160 Hb_000742_160 Hb_001008_200--Hb_000742_160 Hb_001008_200--Hb_000172_510 Hb_007638_020 Hb_007638_020 Hb_001008_200--Hb_007638_020 Hb_001252_090 Hb_001252_090 Hb_001008_200--Hb_001252_090 Hb_001946_180 Hb_001946_180 Hb_012651_010--Hb_001946_180 Hb_012651_010--Hb_000890_230 Hb_000429_050 Hb_000429_050 Hb_012651_010--Hb_000429_050 Hb_000140_350 Hb_000140_350 Hb_012651_010--Hb_000140_350 Hb_000984_310 Hb_000984_310 Hb_012651_010--Hb_000984_310 Hb_002660_150 Hb_002660_150 Hb_000172_510--Hb_002660_150 Hb_000172_510--Hb_001252_090 Hb_000172_510--Hb_000331_370 Hb_000146_040 Hb_000146_040 Hb_000172_510--Hb_000146_040 Hb_000107_080 Hb_000107_080 Hb_000172_510--Hb_000107_080 Hb_000035_200 Hb_000035_200 Hb_000172_510--Hb_000035_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.681983 0.443579 0.74308 2.91126 0.774101 0.613383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.311408 0.490063 0.775938 0.305241 0.55354

CAGE analysis