Hb_007638_020

Information

Type -
Description -
Location Contig7638: 23380-26193
Sequence    

Annotation

kegg
ID rcu:RCOM_0812150
description cysteine protease, putative (EC:1.3.1.74)
nr
ID XP_012065182.1
description PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
swissprot
ID P43297
description Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1
trembl
ID B9RYC1
description Cysteine protease, putative OS=Ricinus communis GN=RCOM_0812150 PE=3 SV=1
Gene Ontology
ID GO:0008234
description cysteine proteinase rd21a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57383: 23568-26343
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007638_020 0.0 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
2 Hb_000705_230 0.0907320362 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
3 Hb_001633_200 0.1019593701 - - hypothetical protein B456_005G137400 [Gossypium raimondii]
4 Hb_003777_200 0.1034931041 - - PREDICTED: uncharacterized protein LOC105640933 [Jatropha curcas]
5 Hb_001252_090 0.106928612 - - GDP-D-mannose pyrophosphorylase [Camellia sinensis]
6 Hb_000046_500 0.111417843 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
7 Hb_000300_600 0.1135379764 - - tubulin alpha chain, putative [Ricinus communis]
8 Hb_089839_010 0.1136376786 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
9 Hb_001633_080 0.1157370993 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
10 Hb_000987_040 0.1200050595 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X2 [Jatropha curcas]
11 Hb_001051_070 0.1203443129 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
12 Hb_000371_090 0.1210562259 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [Jatropha curcas]
13 Hb_000317_040 0.121993283 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
14 Hb_000748_030 0.1227140552 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000322_080 0.1231141786 - - hypothetical protein JCGZ_07423 [Jatropha curcas]
16 Hb_004228_120 0.1235422373 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
17 Hb_016347_020 0.1246349872 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like isoform X1 [Populus euphratica]
18 Hb_159809_070 0.1252641476 - - phospholipase A-2-activating protein, putative [Ricinus communis]
19 Hb_002676_120 0.1254902511 - - hypothetical protein POPTR_0002s23750g [Populus trichocarpa]
20 Hb_006573_040 0.1257358111 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007638_020 Hb_007638_020 Hb_000705_230 Hb_000705_230 Hb_007638_020--Hb_000705_230 Hb_001633_200 Hb_001633_200 Hb_007638_020--Hb_001633_200 Hb_003777_200 Hb_003777_200 Hb_007638_020--Hb_003777_200 Hb_001252_090 Hb_001252_090 Hb_007638_020--Hb_001252_090 Hb_000046_500 Hb_000046_500 Hb_007638_020--Hb_000046_500 Hb_000300_600 Hb_000300_600 Hb_007638_020--Hb_000300_600 Hb_010672_020 Hb_010672_020 Hb_000705_230--Hb_010672_020 Hb_011310_110 Hb_011310_110 Hb_000705_230--Hb_011310_110 Hb_000705_230--Hb_001633_200 Hb_000703_190 Hb_000703_190 Hb_000705_230--Hb_000703_190 Hb_000197_020 Hb_000197_020 Hb_000705_230--Hb_000197_020 Hb_000069_640 Hb_000069_640 Hb_000705_230--Hb_000069_640 Hb_001507_120 Hb_001507_120 Hb_001633_200--Hb_001507_120 Hb_000395_280 Hb_000395_280 Hb_001633_200--Hb_000395_280 Hb_001633_200--Hb_000197_020 Hb_001633_200--Hb_010672_020 Hb_001633_200--Hb_003777_200 Hb_000317_040 Hb_000317_040 Hb_003777_200--Hb_000317_040 Hb_003777_200--Hb_000046_500 Hb_003777_200--Hb_000300_600 Hb_011214_160 Hb_011214_160 Hb_003777_200--Hb_011214_160 Hb_001703_050 Hb_001703_050 Hb_003777_200--Hb_001703_050 Hb_003777_200--Hb_001507_120 Hb_001454_230 Hb_001454_230 Hb_001252_090--Hb_001454_230 Hb_002351_030 Hb_002351_030 Hb_001252_090--Hb_002351_030 Hb_001087_030 Hb_001087_030 Hb_001252_090--Hb_001087_030 Hb_000854_040 Hb_000854_040 Hb_001252_090--Hb_000854_040 Hb_001863_360 Hb_001863_360 Hb_001252_090--Hb_001863_360 Hb_001252_090--Hb_000317_040 Hb_019181_040 Hb_019181_040 Hb_000046_500--Hb_019181_040 Hb_007481_010 Hb_007481_010 Hb_000046_500--Hb_007481_010 Hb_000477_100 Hb_000477_100 Hb_000046_500--Hb_000477_100 Hb_002989_020 Hb_002989_020 Hb_000046_500--Hb_002989_020 Hb_079526_040 Hb_079526_040 Hb_000046_500--Hb_079526_040 Hb_002071_070 Hb_002071_070 Hb_000046_500--Hb_002071_070 Hb_000371_090 Hb_000371_090 Hb_000300_600--Hb_000371_090 Hb_000300_600--Hb_001507_120 Hb_007904_210 Hb_007904_210 Hb_000300_600--Hb_007904_210 Hb_001269_330 Hb_001269_330 Hb_000300_600--Hb_001269_330 Hb_003206_090 Hb_003206_090 Hb_000300_600--Hb_003206_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.2064 15.8097 37.6718 51.7996 17.2689 14.3166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.77896 19.5871 29.8178 28.8923 18.8589

CAGE analysis