Hb_026740_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig26740: 5192-9149
Sequence    

Annotation

kegg
ID pmum:103343741
description putative disease resistance protein RGA1
nr
ID AAO37645.1
description NBS-LRR resistance protein RGH1 [Manihot esculenta]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID Q84XG0
description NBS-LRR resistance protein RGH1 OS=Manihot esculenta PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026740_020 0.0 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
2 Hb_000193_300 0.0745132877 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
3 Hb_000413_020 0.0901444931 - - PREDICTED: U-box domain-containing protein 8 [Jatropha curcas]
4 Hb_000138_060 0.1229873124 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
5 Hb_002289_150 0.1245069172 - - PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
6 Hb_005192_010 0.1268567056 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
7 Hb_000265_140 0.1272679766 - - PREDICTED: transmembrane 9 superfamily member 12 [Jatropha curcas]
8 Hb_001946_180 0.1278451682 - - conserved hypothetical protein [Ricinus communis]
9 Hb_027445_030 0.1303292725 - - F-box/LRR-repeat protein, putative [Ricinus communis]
10 Hb_009252_030 0.1310613412 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
11 Hb_001882_020 0.1328043117 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
12 Hb_006469_070 0.1329430397 - - PREDICTED: F-box/kelch-repeat protein At1g22040 [Jatropha curcas]
13 Hb_002660_110 0.1348053805 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
14 Hb_002129_020 0.1352589033 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
15 Hb_000984_310 0.1373276868 - - Hydrolase, hydrolyzing O-glycosyl compounds, putative [Theobroma cacao]
16 Hb_001999_100 0.1399763432 - - PREDICTED: UDP-glycosyltransferase 71D1-like [Jatropha curcas]
17 Hb_000035_220 0.1404561505 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
18 Hb_001347_050 0.1406572462 - - serine/threonine protein kinase, putative [Ricinus communis]
19 Hb_003052_180 0.1410745575 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
20 Hb_000291_160 0.144408207 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]

Gene co-expression network

sample Hb_026740_020 Hb_026740_020 Hb_000193_300 Hb_000193_300 Hb_026740_020--Hb_000193_300 Hb_000413_020 Hb_000413_020 Hb_026740_020--Hb_000413_020 Hb_000138_060 Hb_000138_060 Hb_026740_020--Hb_000138_060 Hb_002289_150 Hb_002289_150 Hb_026740_020--Hb_002289_150 Hb_005192_010 Hb_005192_010 Hb_026740_020--Hb_005192_010 Hb_000265_140 Hb_000265_140 Hb_026740_020--Hb_000265_140 Hb_000193_300--Hb_000413_020 Hb_001946_180 Hb_001946_180 Hb_000193_300--Hb_001946_180 Hb_005977_100 Hb_005977_100 Hb_000193_300--Hb_005977_100 Hb_001347_050 Hb_001347_050 Hb_000193_300--Hb_001347_050 Hb_000085_260 Hb_000085_260 Hb_000193_300--Hb_000085_260 Hb_000413_020--Hb_005192_010 Hb_003975_010 Hb_003975_010 Hb_000413_020--Hb_003975_010 Hb_000413_020--Hb_001946_180 Hb_009252_030 Hb_009252_030 Hb_000413_020--Hb_009252_030 Hb_000138_060--Hb_002289_150 Hb_116702_010 Hb_116702_010 Hb_000138_060--Hb_116702_010 Hb_011828_010 Hb_011828_010 Hb_000138_060--Hb_011828_010 Hb_000138_060--Hb_001347_050 Hb_002217_320 Hb_002217_320 Hb_000138_060--Hb_002217_320 Hb_000138_060--Hb_005192_010 Hb_001754_060 Hb_001754_060 Hb_002289_150--Hb_001754_060 Hb_000300_230 Hb_000300_230 Hb_002289_150--Hb_000300_230 Hb_000797_060 Hb_000797_060 Hb_002289_150--Hb_000797_060 Hb_002289_150--Hb_011828_010 Hb_005192_010--Hb_003975_010 Hb_001029_040 Hb_001029_040 Hb_005192_010--Hb_001029_040 Hb_003746_010 Hb_003746_010 Hb_005192_010--Hb_003746_010 Hb_000300_510 Hb_000300_510 Hb_005192_010--Hb_000300_510 Hb_000922_060 Hb_000922_060 Hb_005192_010--Hb_000922_060 Hb_001754_020 Hb_001754_020 Hb_005192_010--Hb_001754_020 Hb_000701_030 Hb_000701_030 Hb_000265_140--Hb_000701_030 Hb_002603_040 Hb_002603_040 Hb_000265_140--Hb_002603_040 Hb_012194_060 Hb_012194_060 Hb_000265_140--Hb_012194_060 Hb_000265_140--Hb_000085_260 Hb_000265_140--Hb_001754_020 Hb_021576_070 Hb_021576_070 Hb_000265_140--Hb_021576_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.455849 0.697554 0.336381 2.07919 0.275005 0.537461
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.24272 0.177352 0.33822 0.390008 0.8703

CAGE analysis