Hb_000038_120

Information

Type -
Description -
Location Contig38: 115163-117687
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09740g
description cellulase family protein
nr
ID XP_012079988.1
description PREDICTED: endoglucanase 9-like [Jatropha curcas]
swissprot
ID Q9C9H5
description Endoglucanase 9 OS=Arabidopsis thaliana GN=CEL3 PE=1 SV=1
trembl
ID A0A067LME8
description Endoglucanase OS=Jatropha curcas GN=JCGZ_17191 PE=3 SV=1
Gene Ontology
ID GO:0004553
description endoglucanase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38547: 115043-117672
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000038_120 0.0 - - PREDICTED: endoglucanase 9-like [Jatropha curcas]
2 Hb_011930_150 0.1186182229 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
3 Hb_012362_030 0.1432811585 - - PREDICTED: GPI-anchored protein LORELEI-like [Populus euphratica]
4 Hb_004088_040 0.1464513081 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform [Jatropha curcas]
5 Hb_135757_020 0.1488128249 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
6 Hb_001008_200 0.1559926706 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC103961552 [Pyrus x bretschneideri]
7 Hb_001051_070 0.1599027847 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
8 Hb_135757_010 0.1615416651 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
9 Hb_019280_020 0.1628655787 - - PREDICTED: proline-rich receptor-like protein kinase PERK14 isoform X1 [Jatropha curcas]
10 Hb_003464_070 0.1635937678 transcription factor TF Family: Trihelix PREDICTED: stress response protein NST1 [Jatropha curcas]
11 Hb_000010_310 0.1671698112 - - PREDICTED: probable pectate lyase 18 [Populus euphratica]
12 Hb_000023_300 0.1671846914 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
13 Hb_000402_130 0.1680820715 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
14 Hb_012262_030 0.1693428673 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
15 Hb_001769_060 0.169444781 - - PREDICTED: F-box protein At3g12350 isoform X1 [Jatropha curcas]
16 Hb_002811_280 0.1695371187 - - PREDICTED: probable aldo-keto reductase 1 [Jatropha curcas]
17 Hb_007638_020 0.1702778646 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
18 Hb_000853_200 0.1709201568 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
19 Hb_000221_240 0.1711949912 - - chloroplast 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Hevea brasiliensis]
20 Hb_000110_050 0.1717095698 - - -

Gene co-expression network

sample Hb_000038_120 Hb_000038_120 Hb_011930_150 Hb_011930_150 Hb_000038_120--Hb_011930_150 Hb_012362_030 Hb_012362_030 Hb_000038_120--Hb_012362_030 Hb_004088_040 Hb_004088_040 Hb_000038_120--Hb_004088_040 Hb_135757_020 Hb_135757_020 Hb_000038_120--Hb_135757_020 Hb_001008_200 Hb_001008_200 Hb_000038_120--Hb_001008_200 Hb_001051_070 Hb_001051_070 Hb_000038_120--Hb_001051_070 Hb_029695_050 Hb_029695_050 Hb_011930_150--Hb_029695_050 Hb_011930_150--Hb_001051_070 Hb_135757_010 Hb_135757_010 Hb_011930_150--Hb_135757_010 Hb_009193_090 Hb_009193_090 Hb_011930_150--Hb_009193_090 Hb_000371_090 Hb_000371_090 Hb_011930_150--Hb_000371_090 Hb_019280_020 Hb_019280_020 Hb_012362_030--Hb_019280_020 Hb_000062_530 Hb_000062_530 Hb_012362_030--Hb_000062_530 Hb_000062_090 Hb_000062_090 Hb_012362_030--Hb_000062_090 Hb_029510_100 Hb_029510_100 Hb_012362_030--Hb_029510_100 Hb_147245_010 Hb_147245_010 Hb_012362_030--Hb_147245_010 Hb_000008_190 Hb_000008_190 Hb_012362_030--Hb_000008_190 Hb_000197_020 Hb_000197_020 Hb_004088_040--Hb_000197_020 Hb_001507_120 Hb_001507_120 Hb_004088_040--Hb_001507_120 Hb_001633_200 Hb_001633_200 Hb_004088_040--Hb_001633_200 Hb_000742_020 Hb_000742_020 Hb_004088_040--Hb_000742_020 Hb_000705_230 Hb_000705_230 Hb_004088_040--Hb_000705_230 Hb_000066_030 Hb_000066_030 Hb_004088_040--Hb_000066_030 Hb_004094_020 Hb_004094_020 Hb_135757_020--Hb_004094_020 Hb_000221_240 Hb_000221_240 Hb_135757_020--Hb_000221_240 Hb_001021_010 Hb_001021_010 Hb_135757_020--Hb_001021_010 Hb_004330_080 Hb_004330_080 Hb_135757_020--Hb_004330_080 Hb_000824_050 Hb_000824_050 Hb_135757_020--Hb_000824_050 Hb_135757_020--Hb_019280_020 Hb_001008_200--Hb_011930_150 Hb_000742_160 Hb_000742_160 Hb_001008_200--Hb_000742_160 Hb_000172_510 Hb_000172_510 Hb_001008_200--Hb_000172_510 Hb_024074_020 Hb_024074_020 Hb_001008_200--Hb_024074_020 Hb_007638_020 Hb_007638_020 Hb_001008_200--Hb_007638_020 Hb_001252_090 Hb_001252_090 Hb_001008_200--Hb_001252_090 Hb_000477_100 Hb_000477_100 Hb_001051_070--Hb_000477_100 Hb_007286_020 Hb_007286_020 Hb_001051_070--Hb_007286_020 Hb_000023_300 Hb_000023_300 Hb_001051_070--Hb_000023_300 Hb_011214_160 Hb_011214_160 Hb_001051_070--Hb_011214_160 Hb_003998_040 Hb_003998_040 Hb_001051_070--Hb_003998_040 Hb_000679_100 Hb_000679_100 Hb_001051_070--Hb_000679_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.7396 19.6601 36.7854 106.599 9.2352 12.4104
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.1739 17.7525 48.4034 57.7084 14.1506

CAGE analysis