Hb_004088_040

Information

Type -
Description -
Location Contig4088: 45661-48922
Sequence    

Annotation

kegg
ID rcu:RCOM_0804590
description protein phosphatase 2a, regulatory subunit, putative
nr
ID XP_012078625.1
description PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform [Jatropha curcas]
swissprot
ID Q93YV6
description Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform OS=Arabidopsis thaliana GN=B'IOTA PE=2 SV=1
trembl
ID A0A067KBC3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13213 PE=4 SV=1
Gene Ontology
ID GO:0000159
description serine threonine protein phosphatase 2a 57 kda regulatory subunit b iota isoform-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40378: 45653-48844 , PASA_asmbl_40380: 48937-49091
cDNA
(Sanger)
(ID:Location)		 007_P05.ab1: 48098-48832 , 044_H23.ab1: 48087-48832

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004088_040 0.0 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform [Jatropha curcas]
2 Hb_000197_020 0.0944974375 - - PREDICTED: protein RER1A [Jatropha curcas]
3 Hb_001507_120 0.1040012102 - - transcription factor, putative [Ricinus communis]
4 Hb_001633_200 0.1083193865 - - hypothetical protein B456_005G137400 [Gossypium raimondii]
5 Hb_000742_020 0.1109495282 - - ARF GTPase activator, putative [Ricinus communis]
6 Hb_000705_230 0.1141594893 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
7 Hb_000066_030 0.1153583796 - - PREDICTED: uncharacterized protein LOC105643898 isoform X2 [Jatropha curcas]
8 Hb_003777_200 0.115987755 - - PREDICTED: uncharacterized protein LOC105640933 [Jatropha curcas]
9 Hb_000854_040 0.1186182757 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
10 Hb_001842_010 0.1191406676 - - serine/threonine protein kinase, putative [Ricinus communis]
11 Hb_000244_170 0.1213403966 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
12 Hb_000853_200 0.1214742959 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
13 Hb_000748_030 0.1232868105 - - ATP binding protein, putative [Ricinus communis]
14 Hb_000300_600 0.1241293469 - - tubulin alpha chain, putative [Ricinus communis]
15 Hb_005218_020 0.1241564818 - - Uncharacterized protein isoform 3 [Theobroma cacao]
16 Hb_000395_110 0.1247236969 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
17 Hb_000243_350 0.1251689607 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Tarenaya hassleriana]
18 Hb_000260_510 0.1255472917 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
19 Hb_010672_020 0.1263797515 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]
20 Hb_007638_020 0.1269541454 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]

Gene co-expression network

sample Hb_004088_040 Hb_004088_040 Hb_000197_020 Hb_000197_020 Hb_004088_040--Hb_000197_020 Hb_001507_120 Hb_001507_120 Hb_004088_040--Hb_001507_120 Hb_001633_200 Hb_001633_200 Hb_004088_040--Hb_001633_200 Hb_000742_020 Hb_000742_020 Hb_004088_040--Hb_000742_020 Hb_000705_230 Hb_000705_230 Hb_004088_040--Hb_000705_230 Hb_000066_030 Hb_000066_030 Hb_004088_040--Hb_000066_030 Hb_000197_020--Hb_000066_030 Hb_003998_040 Hb_003998_040 Hb_000197_020--Hb_003998_040 Hb_004055_120 Hb_004055_120 Hb_000197_020--Hb_004055_120 Hb_000197_020--Hb_000705_230 Hb_010407_140 Hb_010407_140 Hb_000197_020--Hb_010407_140 Hb_011214_160 Hb_011214_160 Hb_000197_020--Hb_011214_160 Hb_001507_120--Hb_001633_200 Hb_001957_010 Hb_001957_010 Hb_001507_120--Hb_001957_010 Hb_065968_010 Hb_065968_010 Hb_001507_120--Hb_065968_010 Hb_000395_280 Hb_000395_280 Hb_001507_120--Hb_000395_280 Hb_003777_200 Hb_003777_200 Hb_001507_120--Hb_003777_200 Hb_000260_510 Hb_000260_510 Hb_001507_120--Hb_000260_510 Hb_001633_200--Hb_000705_230 Hb_001633_200--Hb_000395_280 Hb_001633_200--Hb_000197_020 Hb_010672_020 Hb_010672_020 Hb_001633_200--Hb_010672_020 Hb_001633_200--Hb_003777_200 Hb_013394_050 Hb_013394_050 Hb_000742_020--Hb_013394_050 Hb_001609_040 Hb_001609_040 Hb_000742_020--Hb_001609_040 Hb_007441_080 Hb_007441_080 Hb_000742_020--Hb_007441_080 Hb_005993_010 Hb_005993_010 Hb_000742_020--Hb_005993_010 Hb_000069_640 Hb_000069_640 Hb_000742_020--Hb_000069_640 Hb_000244_170 Hb_000244_170 Hb_000742_020--Hb_000244_170 Hb_000705_230--Hb_010672_020 Hb_011310_110 Hb_011310_110 Hb_000705_230--Hb_011310_110 Hb_000703_190 Hb_000703_190 Hb_000705_230--Hb_000703_190 Hb_000705_230--Hb_000069_640 Hb_000066_030--Hb_003998_040 Hb_005218_020 Hb_005218_020 Hb_000066_030--Hb_005218_020 Hb_007765_040 Hb_007765_040 Hb_000066_030--Hb_007765_040 Hb_000371_090 Hb_000371_090 Hb_000066_030--Hb_000371_090 Hb_000066_030--Hb_011214_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.48566 4.02276 11.3225 23.386 3.27852 5.34938
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.56608 4.29126 13.598 8.27593 9.14498

CAGE analysis