Hb_012362_030

Information

Type -
Description -
Location Contig12362: 39285-48939
Sequence    

Annotation

kegg
ID pop:POPTR_0001s47550g
description POPTRDRAFT_550665; hypothetical protein
nr
ID XP_011039872.1
description PREDICTED: GPI-anchored protein LORELEI-like [Populus euphratica]
swissprot
ID B3GS44
description GPI-anchored protein LORELEI OS=Arabidopsis thaliana GN=LRE PE=2 SV=1
trembl
ID B9GHJ9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s47550g PE=4 SV=2
Gene Ontology
ID GO:0031225
description gpi-anchored protein lorelei-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07199: 39295-48949 , PASA_asmbl_07204: 40263-40639
cDNA
(Sanger)
(ID:Location)		 001_P06.ab1: 39388-48777 , 011_B20.ab1: 39580-48948 , 017_C14.ab1: 39580-48778 , 017_O17.ab1: 39546-48761 , 019_M13.ab1: 39485-48761 , 034_D18.ab1: 39369-48761

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012362_030 0.0 - - PREDICTED: GPI-anchored protein LORELEI-like [Populus euphratica]
2 Hb_019280_020 0.0825320428 - - PREDICTED: proline-rich receptor-like protein kinase PERK14 isoform X1 [Jatropha curcas]
3 Hb_000062_530 0.1214754292 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
4 Hb_000062_090 0.1227843959 - - PREDICTED: uncharacterized protein LOC105644743 isoform X2 [Jatropha curcas]
5 Hb_029510_100 0.1253592806 - - scab resistance family protein [Populus trichocarpa]
6 Hb_147245_010 0.1287661782 - - casein kinase, putative [Ricinus communis]
7 Hb_000008_190 0.1353109569 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
8 Hb_006569_060 0.1378008557 - - plasma membrane intrinsic protein PIP2;3 [Hevea brasiliensis]
9 Hb_001481_150 0.1395590871 - - hypothetical protein POPTR_0001s15440g [Populus trichocarpa]
10 Hb_001014_190 0.1423891389 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
11 Hb_033152_070 0.1428069749 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
12 Hb_006922_090 0.142929619 - - PREDICTED: interaptin [Jatropha curcas]
13 Hb_000038_120 0.1432811585 - - PREDICTED: endoglucanase 9-like [Jatropha curcas]
14 Hb_009898_040 0.1434108145 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010042_020 0.1438561469 - - UDP-n-acteylglucosamine pyrophosphorylase, putative [Ricinus communis]
16 Hb_002781_030 0.1470581016 - - protein binding protein, putative [Ricinus communis]
17 Hb_004480_020 0.1478234582 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
18 Hb_148130_020 0.149005386 - - -
19 Hb_000402_130 0.1503079038 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
20 Hb_004525_040 0.1527295385 - - PREDICTED: sugar transporter ERD6-like 6 [Jatropha curcas]

Gene co-expression network

sample Hb_012362_030 Hb_012362_030 Hb_019280_020 Hb_019280_020 Hb_012362_030--Hb_019280_020 Hb_000062_530 Hb_000062_530 Hb_012362_030--Hb_000062_530 Hb_000062_090 Hb_000062_090 Hb_012362_030--Hb_000062_090 Hb_029510_100 Hb_029510_100 Hb_012362_030--Hb_029510_100 Hb_147245_010 Hb_147245_010 Hb_012362_030--Hb_147245_010 Hb_000008_190 Hb_000008_190 Hb_012362_030--Hb_000008_190 Hb_001481_150 Hb_001481_150 Hb_019280_020--Hb_001481_150 Hb_000152_710 Hb_000152_710 Hb_019280_020--Hb_000152_710 Hb_019280_020--Hb_029510_100 Hb_033152_070 Hb_033152_070 Hb_019280_020--Hb_033152_070 Hb_004525_040 Hb_004525_040 Hb_019280_020--Hb_004525_040 Hb_003710_020 Hb_003710_020 Hb_000062_530--Hb_003710_020 Hb_001545_130 Hb_001545_130 Hb_000062_530--Hb_001545_130 Hb_004109_050 Hb_004109_050 Hb_000062_530--Hb_004109_050 Hb_000062_530--Hb_000152_710 Hb_000062_530--Hb_019280_020 Hb_000402_130 Hb_000402_130 Hb_000062_090--Hb_000402_130 Hb_048476_060 Hb_048476_060 Hb_000062_090--Hb_048476_060 Hb_006711_090 Hb_006711_090 Hb_000062_090--Hb_006711_090 Hb_004158_020 Hb_004158_020 Hb_000062_090--Hb_004158_020 Hb_000671_130 Hb_000671_130 Hb_000062_090--Hb_000671_130 Hb_001014_190 Hb_001014_190 Hb_029510_100--Hb_001014_190 Hb_004330_080 Hb_004330_080 Hb_029510_100--Hb_004330_080 Hb_004094_020 Hb_004094_020 Hb_029510_100--Hb_004094_020 Hb_000120_230 Hb_000120_230 Hb_029510_100--Hb_000120_230 Hb_002235_060 Hb_002235_060 Hb_147245_010--Hb_002235_060 Hb_147245_010--Hb_001545_130 Hb_007537_030 Hb_007537_030 Hb_147245_010--Hb_007537_030 Hb_000928_120 Hb_000928_120 Hb_147245_010--Hb_000928_120 Hb_147245_010--Hb_004109_050 Hb_147245_010--Hb_000152_710 Hb_118507_010 Hb_118507_010 Hb_000008_190--Hb_118507_010 Hb_002486_050 Hb_002486_050 Hb_000008_190--Hb_002486_050 Hb_001195_410 Hb_001195_410 Hb_000008_190--Hb_001195_410 Hb_004126_040 Hb_004126_040 Hb_000008_190--Hb_004126_040 Hb_002660_110 Hb_002660_110 Hb_000008_190--Hb_002660_110 Hb_000008_190--Hb_001481_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.42578 18.0914 19.9807 77.2001 3.25136 8.48233
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.4249 12.2069 14.9823 30.0009 12.6996

CAGE analysis