Hb_029695_050

Information

Type -
Description -
Location Contig29695: 26696-29789
Sequence    

Annotation

kegg
ID rcu:RCOM_0521900
description hypothetical protein
nr
ID XP_012071008.1
description PREDICTED: fasciclin-like arabinogalactan protein 1 [Jatropha curcas]
swissprot
ID Q9FM65
description Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana GN=FLA1 PE=1 SV=1
trembl
ID A0A067L461
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01027 PE=4 SV=1
Gene Ontology
ID GO:0005618
description fasciclin-like arabinogalactan protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31056: 26882-29941
cDNA
(Sanger)
(ID:Location)		 008_L05.ab1: 29403-29859

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029695_050 0.0 - - PREDICTED: fasciclin-like arabinogalactan protein 1 [Jatropha curcas]
2 Hb_000818_100 0.1004484031 - - PREDICTED: delta(24)-sterol reductase [Jatropha curcas]
3 Hb_011930_150 0.1086979551 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
4 Hb_135757_010 0.1111682815 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
5 Hb_030736_060 0.1171222563 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
6 Hb_000371_090 0.1255831135 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [Jatropha curcas]
7 Hb_007786_030 0.1257534665 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Jatropha curcas]
8 Hb_000184_160 0.1274541963 - - PREDICTED: uncharacterized protein LOC105647991 [Jatropha curcas]
9 Hb_000656_160 0.1279284819 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
10 Hb_000331_370 0.1281366634 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
11 Hb_000002_480 0.131466828 - - PREDICTED: protein WVD2-like 1 isoform X2 [Jatropha curcas]
12 Hb_086639_080 0.1322537647 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000889_100 0.1342864509 - - PREDICTED: syntaxin-132-like isoform X2 [Sesamum indicum]
14 Hb_003910_010 0.1383493011 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
15 Hb_000134_120 0.145206623 - - PREDICTED: uncharacterized protein LOC105628669 [Jatropha curcas]
16 Hb_000258_220 0.1454461519 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
17 Hb_007286_020 0.1455840528 - - hypothetical protein L484_010675 [Morus notabilis]
18 Hb_001051_070 0.145701353 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
19 Hb_000503_020 0.1464042489 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
20 Hb_000077_290 0.1474520956 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_029695_050 Hb_029695_050 Hb_000818_100 Hb_000818_100 Hb_029695_050--Hb_000818_100 Hb_011930_150 Hb_011930_150 Hb_029695_050--Hb_011930_150 Hb_135757_010 Hb_135757_010 Hb_029695_050--Hb_135757_010 Hb_030736_060 Hb_030736_060 Hb_029695_050--Hb_030736_060 Hb_000371_090 Hb_000371_090 Hb_029695_050--Hb_000371_090 Hb_007786_030 Hb_007786_030 Hb_029695_050--Hb_007786_030 Hb_009247_010 Hb_009247_010 Hb_000818_100--Hb_009247_010 Hb_009222_070 Hb_009222_070 Hb_000818_100--Hb_009222_070 Hb_000503_020 Hb_000503_020 Hb_000818_100--Hb_000503_020 Hb_000098_050 Hb_000098_050 Hb_000818_100--Hb_000098_050 Hb_000134_120 Hb_000134_120 Hb_000818_100--Hb_000134_120 Hb_001051_070 Hb_001051_070 Hb_011930_150--Hb_001051_070 Hb_011930_150--Hb_135757_010 Hb_009193_090 Hb_009193_090 Hb_011930_150--Hb_009193_090 Hb_000038_120 Hb_000038_120 Hb_011930_150--Hb_000038_120 Hb_011930_150--Hb_000371_090 Hb_000679_100 Hb_000679_100 Hb_135757_010--Hb_000679_100 Hb_135757_010--Hb_001051_070 Hb_001159_030 Hb_001159_030 Hb_135757_010--Hb_001159_030 Hb_135757_010--Hb_030736_060 Hb_016347_020 Hb_016347_020 Hb_030736_060--Hb_016347_020 Hb_000684_080 Hb_000684_080 Hb_030736_060--Hb_000684_080 Hb_121089_030 Hb_121089_030 Hb_030736_060--Hb_121089_030 Hb_000963_040 Hb_000963_040 Hb_030736_060--Hb_000963_040 Hb_000261_210 Hb_000261_210 Hb_030736_060--Hb_000261_210 Hb_001227_130 Hb_001227_130 Hb_030736_060--Hb_001227_130 Hb_003998_040 Hb_003998_040 Hb_000371_090--Hb_003998_040 Hb_000184_070 Hb_000184_070 Hb_000371_090--Hb_000184_070 Hb_011214_160 Hb_011214_160 Hb_000371_090--Hb_011214_160 Hb_000371_090--Hb_000261_210 Hb_002351_030 Hb_002351_030 Hb_000371_090--Hb_002351_030 Hb_000066_030 Hb_000066_030 Hb_000371_090--Hb_000066_030 Hb_000331_140 Hb_000331_140 Hb_007786_030--Hb_000331_140 Hb_010381_010 Hb_010381_010 Hb_007786_030--Hb_010381_010 Hb_005064_010 Hb_005064_010 Hb_007786_030--Hb_005064_010 Hb_004064_040 Hb_004064_040 Hb_007786_030--Hb_004064_040 Hb_010655_020 Hb_010655_020 Hb_007786_030--Hb_010655_020 Hb_000056_160 Hb_000056_160 Hb_007786_030--Hb_000056_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.711 11.6131 31.588 68.6347 16.1598 20.8097
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7649 3.62962 13.6 26.7979 11.295

CAGE analysis