Hb_010381_010

Information

Type -
Description -
Location Contig10381: 816-4723
Sequence    

Annotation

kegg
ID rcu:RCOM_0312320
description WD-repeat protein, putative (EC:2.3.1.48)
nr
ID XP_002527406.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID O22607
description WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana GN=MSI4 PE=1 SV=3
trembl
ID B9SN37
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0312320 PE=4 SV=1
Gene Ontology
ID GO:0005515
description wd-40 repeat-containing protein msi4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010381_010 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_161568_010 0.0896327021 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
3 Hb_003119_090 0.0988011136 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
4 Hb_000836_300 0.1081932296 - - caax prenyl protease ste24, putative [Ricinus communis]
5 Hb_007786_030 0.1097752415 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Jatropha curcas]
6 Hb_004096_160 0.1105342756 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
7 Hb_000622_200 0.1118873405 - - aldose 1-epimerase, putative [Ricinus communis]
8 Hb_001227_130 0.1120077448 - - PREDICTED: delta(14)-sterol reductase [Jatropha curcas]
9 Hb_005064_010 0.1125971608 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
10 Hb_002351_030 0.1126863219 - - catalytic, putative [Ricinus communis]
11 Hb_011282_060 0.1127337116 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
12 Hb_023313_040 0.1128924742 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
13 Hb_001482_050 0.1137240432 - - COR413-PM2, putative [Ricinus communis]
14 Hb_004228_120 0.1161164324 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
15 Hb_002676_120 0.1170927324 - - hypothetical protein POPTR_0002s23750g [Populus trichocarpa]
16 Hb_002686_080 0.1187701071 transcription factor TF Family: PHD PREDICTED: PHD finger protein ING2-like [Jatropha curcas]
17 Hb_006570_160 0.1195464272 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
18 Hb_000916_070 0.1200603139 - - PREDICTED: sister chromatid cohesion protein DCC1-like [Jatropha curcas]
19 Hb_002485_030 0.1204245802 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
20 Hb_000963_040 0.121344168 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]

Gene co-expression network

sample Hb_010381_010 Hb_010381_010 Hb_161568_010 Hb_161568_010 Hb_010381_010--Hb_161568_010 Hb_003119_090 Hb_003119_090 Hb_010381_010--Hb_003119_090 Hb_000836_300 Hb_000836_300 Hb_010381_010--Hb_000836_300 Hb_007786_030 Hb_007786_030 Hb_010381_010--Hb_007786_030 Hb_004096_160 Hb_004096_160 Hb_010381_010--Hb_004096_160 Hb_000622_200 Hb_000622_200 Hb_010381_010--Hb_000622_200 Hb_161568_010--Hb_004096_160 Hb_004228_120 Hb_004228_120 Hb_161568_010--Hb_004228_120 Hb_005649_100 Hb_005649_100 Hb_161568_010--Hb_005649_100 Hb_000958_080 Hb_000958_080 Hb_161568_010--Hb_000958_080 Hb_000703_160 Hb_000703_160 Hb_161568_010--Hb_000703_160 Hb_000497_190 Hb_000497_190 Hb_161568_010--Hb_000497_190 Hb_007007_040 Hb_007007_040 Hb_003119_090--Hb_007007_040 Hb_003943_050 Hb_003943_050 Hb_003119_090--Hb_003943_050 Hb_003760_030 Hb_003760_030 Hb_003119_090--Hb_003760_030 Hb_023313_040 Hb_023313_040 Hb_003119_090--Hb_023313_040 Hb_001501_080 Hb_001501_080 Hb_003119_090--Hb_001501_080 Hb_030982_030 Hb_030982_030 Hb_003119_090--Hb_030982_030 Hb_004064_040 Hb_004064_040 Hb_000836_300--Hb_004064_040 Hb_005730_010 Hb_005730_010 Hb_000836_300--Hb_005730_010 Hb_164945_010 Hb_164945_010 Hb_000836_300--Hb_164945_010 Hb_005064_010 Hb_005064_010 Hb_000836_300--Hb_005064_010 Hb_000622_110 Hb_000622_110 Hb_000836_300--Hb_000622_110 Hb_000836_300--Hb_004228_120 Hb_000331_140 Hb_000331_140 Hb_007786_030--Hb_000331_140 Hb_007786_030--Hb_005064_010 Hb_007786_030--Hb_004064_040 Hb_010655_020 Hb_010655_020 Hb_007786_030--Hb_010655_020 Hb_000056_160 Hb_000056_160 Hb_007786_030--Hb_000056_160 Hb_004096_160--Hb_000958_080 Hb_002909_040 Hb_002909_040 Hb_004096_160--Hb_002909_040 Hb_009449_060 Hb_009449_060 Hb_004096_160--Hb_009449_060 Hb_000089_210 Hb_000089_210 Hb_004096_160--Hb_000089_210 Hb_000236_490 Hb_000236_490 Hb_004096_160--Hb_000236_490 Hb_000580_100 Hb_000580_100 Hb_000622_200--Hb_000580_100 Hb_001482_050 Hb_001482_050 Hb_000622_200--Hb_001482_050 Hb_007850_030 Hb_007850_030 Hb_000622_200--Hb_007850_030 Hb_016734_080 Hb_016734_080 Hb_000622_200--Hb_016734_080 Hb_039021_010 Hb_039021_010 Hb_000622_200--Hb_039021_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.15261 4.82345 16.5735 13.5799 5.85656 7.12189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.25814 4.26995 4.84833 6.90384 3.10344

CAGE analysis