Hb_000580_100

Information

Type -
Description -
Location Contig580: 51679-54341
Sequence    

Annotation

kegg
ID rcu:RCOM_0835850
description hypothetical protein
nr
ID XP_012083590.1
description PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JXU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14537 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49834: 49299-51065 , PASA_asmbl_49835: 45273-51021 , PASA_asmbl_49837: 51900-52115 , PASA_asmbl_49838: 51298-52393 , PASA_asmbl_49839: 52817-52915 , PASA_asmbl_49840: 53572-54395
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000580_100 0.0 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
2 Hb_039021_010 0.0972571065 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
3 Hb_005245_120 0.1050717036 - - XPA-binding protein, putative [Ricinus communis]
4 Hb_000622_200 0.1069066003 - - aldose 1-epimerase, putative [Ricinus communis]
5 Hb_000913_040 0.1077002631 - - Methyltransferase-related protein, putative [Theobroma cacao]
6 Hb_004117_190 0.1101791875 - - PREDICTED: uncharacterized protein LOC105649109 [Jatropha curcas]
7 Hb_004079_130 0.1164003471 - - PREDICTED: uncharacterized protein LOC105637708 [Jatropha curcas]
8 Hb_010789_020 0.118579523 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
9 Hb_007850_030 0.1199960394 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
10 Hb_004567_010 0.1214760103 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
11 Hb_001191_080 0.1217699318 - - protein with unknown function [Ricinus communis]
12 Hb_004055_050 0.1226668257 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
13 Hb_007741_130 0.125078925 - - hypothetical protein B456_007G089000 [Gossypium raimondii]
14 Hb_011671_480 0.126569613 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001584_260 0.1288887985 - - zinc finger protein, putative [Ricinus communis]
16 Hb_124373_010 0.1296665143 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
17 Hb_000116_560 0.1381587403 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
18 Hb_003540_050 0.1387786729 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
19 Hb_001482_050 0.1389475247 - - COR413-PM2, putative [Ricinus communis]
20 Hb_005463_050 0.1398357277 - - PREDICTED: uncharacterized protein LOC105632514 [Jatropha curcas]

Gene co-expression network

sample Hb_000580_100 Hb_000580_100 Hb_039021_010 Hb_039021_010 Hb_000580_100--Hb_039021_010 Hb_005245_120 Hb_005245_120 Hb_000580_100--Hb_005245_120 Hb_000622_200 Hb_000622_200 Hb_000580_100--Hb_000622_200 Hb_000913_040 Hb_000913_040 Hb_000580_100--Hb_000913_040 Hb_004117_190 Hb_004117_190 Hb_000580_100--Hb_004117_190 Hb_004079_130 Hb_004079_130 Hb_000580_100--Hb_004079_130 Hb_005144_210 Hb_005144_210 Hb_039021_010--Hb_005144_210 Hb_000836_300 Hb_000836_300 Hb_039021_010--Hb_000836_300 Hb_039021_010--Hb_004079_130 Hb_003050_260 Hb_003050_260 Hb_039021_010--Hb_003050_260 Hb_000617_310 Hb_000617_310 Hb_039021_010--Hb_000617_310 Hb_032202_100 Hb_032202_100 Hb_005245_120--Hb_032202_100 Hb_000926_200 Hb_000926_200 Hb_005245_120--Hb_000926_200 Hb_001804_080 Hb_001804_080 Hb_005245_120--Hb_001804_080 Hb_000116_490 Hb_000116_490 Hb_005245_120--Hb_000116_490 Hb_001357_310 Hb_001357_310 Hb_005245_120--Hb_001357_310 Hb_001191_080 Hb_001191_080 Hb_005245_120--Hb_001191_080 Hb_010381_010 Hb_010381_010 Hb_000622_200--Hb_010381_010 Hb_001482_050 Hb_001482_050 Hb_000622_200--Hb_001482_050 Hb_007850_030 Hb_007850_030 Hb_000622_200--Hb_007850_030 Hb_016734_080 Hb_016734_080 Hb_000622_200--Hb_016734_080 Hb_000622_200--Hb_039021_010 Hb_000953_130 Hb_000953_130 Hb_000913_040--Hb_000953_130 Hb_000116_560 Hb_000116_560 Hb_000913_040--Hb_000116_560 Hb_007390_020 Hb_007390_020 Hb_000913_040--Hb_007390_020 Hb_011671_480 Hb_011671_480 Hb_000913_040--Hb_011671_480 Hb_001584_260 Hb_001584_260 Hb_000913_040--Hb_001584_260 Hb_007741_130 Hb_007741_130 Hb_004117_190--Hb_007741_130 Hb_005054_220 Hb_005054_220 Hb_004117_190--Hb_005054_220 Hb_101146_010 Hb_101146_010 Hb_004117_190--Hb_101146_010 Hb_003540_050 Hb_003540_050 Hb_004117_190--Hb_003540_050 Hb_001268_340 Hb_001268_340 Hb_004117_190--Hb_001268_340 Hb_000120_810 Hb_000120_810 Hb_004079_130--Hb_000120_810 Hb_000227_390 Hb_000227_390 Hb_004079_130--Hb_000227_390 Hb_026198_010 Hb_026198_010 Hb_004079_130--Hb_026198_010 Hb_004079_130--Hb_001482_050 Hb_000704_030 Hb_000704_030 Hb_004079_130--Hb_000704_030 Hb_012092_050 Hb_012092_050 Hb_004079_130--Hb_012092_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.05478 3.61544 8.1739 8.48921 1.91963 2.27128
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.8928 4.79391 1.07468 4.27505 1.63638

CAGE analysis