Hb_000116_560

Information

Type -
Description -
Location Contig116: 478786-483323
Sequence    

Annotation

kegg
ID tcc:TCM_000021
description Serine/threonine phosphatase 7 isoform 1
nr
ID XP_012087578.1
description PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
swissprot
ID Q9FN02
description Serine/threonine-protein phosphatase 7 OS=Arabidopsis thaliana GN=PP7 PE=1 SV=1
trembl
ID A0A061DKQ5
description Serine/threonine-protein phosphatase OS=Theobroma cacao GN=TCM_000021 PE=3 SV=1
Gene Ontology
ID GO:0004722
description serine threonine-protein phosphatase 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04902: 479042-483294 , PASA_asmbl_04903: 480940-481108
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_560 0.0 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
2 Hb_018845_010 0.0956075647 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
3 Hb_177994_010 0.103244534 - - PREDICTED: cullin-1 [Jatropha curcas]
4 Hb_011671_120 0.1116315426 - - hypothetical protein JCGZ_26275 [Jatropha curcas]
5 Hb_000375_300 0.1119259735 - - PREDICTED: cyanate hydratase [Jatropha curcas]
6 Hb_081599_010 0.1160579423 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000913_040 0.1196290866 - - Methyltransferase-related protein, putative [Theobroma cacao]
8 Hb_002740_080 0.1206009232 - - flap endonuclease-1, putative [Ricinus communis]
9 Hb_000703_330 0.1227715428 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000753_160 0.123531953 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
11 Hb_001250_050 0.1246844637 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
12 Hb_170098_010 0.1248620007 - - PREDICTED: cullin-1 [Jatropha curcas]
13 Hb_000165_080 0.1252960324 - - PREDICTED: multiple inositol polyphosphate phosphatase 1 isoform X1 [Jatropha curcas]
14 Hb_004055_050 0.1261605249 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
15 Hb_002193_060 0.1274640378 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
16 Hb_011716_010 0.127492444 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
17 Hb_002693_030 0.127516191 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
18 Hb_004449_180 0.1288971823 - - PREDICTED: SAC3 family protein 1 [Jatropha curcas]
19 Hb_002739_120 0.1298961719 - - PREDICTED: zinc finger protein ZPR1-like [Jatropha curcas]
20 Hb_001279_190 0.1302332327 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000116_560 Hb_000116_560 Hb_018845_010 Hb_018845_010 Hb_000116_560--Hb_018845_010 Hb_177994_010 Hb_177994_010 Hb_000116_560--Hb_177994_010 Hb_011671_120 Hb_011671_120 Hb_000116_560--Hb_011671_120 Hb_000375_300 Hb_000375_300 Hb_000116_560--Hb_000375_300 Hb_081599_010 Hb_081599_010 Hb_000116_560--Hb_081599_010 Hb_000913_040 Hb_000913_040 Hb_000116_560--Hb_000913_040 Hb_018845_010--Hb_000375_300 Hb_000009_060 Hb_000009_060 Hb_018845_010--Hb_000009_060 Hb_002193_060 Hb_002193_060 Hb_018845_010--Hb_002193_060 Hb_004218_130 Hb_004218_130 Hb_018845_010--Hb_004218_130 Hb_007416_070 Hb_007416_070 Hb_018845_010--Hb_007416_070 Hb_001616_070 Hb_001616_070 Hb_018845_010--Hb_001616_070 Hb_004449_180 Hb_004449_180 Hb_177994_010--Hb_004449_180 Hb_000926_260 Hb_000926_260 Hb_177994_010--Hb_000926_260 Hb_006916_110 Hb_006916_110 Hb_177994_010--Hb_006916_110 Hb_000088_270 Hb_000088_270 Hb_177994_010--Hb_000088_270 Hb_000684_040 Hb_000684_040 Hb_177994_010--Hb_000684_040 Hb_001301_280 Hb_001301_280 Hb_011671_120--Hb_001301_280 Hb_000500_220 Hb_000500_220 Hb_011671_120--Hb_000500_220 Hb_002687_200 Hb_002687_200 Hb_011671_120--Hb_002687_200 Hb_002486_080 Hb_002486_080 Hb_011671_120--Hb_002486_080 Hb_001951_060 Hb_001951_060 Hb_011671_120--Hb_001951_060 Hb_011671_120--Hb_000375_300 Hb_000375_300--Hb_002193_060 Hb_000007_090 Hb_000007_090 Hb_000375_300--Hb_000007_090 Hb_001619_060 Hb_001619_060 Hb_000375_300--Hb_001619_060 Hb_116349_120 Hb_116349_120 Hb_000375_300--Hb_116349_120 Hb_008725_270 Hb_008725_270 Hb_000375_300--Hb_008725_270 Hb_002740_080 Hb_002740_080 Hb_081599_010--Hb_002740_080 Hb_001227_120 Hb_001227_120 Hb_081599_010--Hb_001227_120 Hb_000152_600 Hb_000152_600 Hb_081599_010--Hb_000152_600 Hb_003498_100 Hb_003498_100 Hb_081599_010--Hb_003498_100 Hb_001279_190 Hb_001279_190 Hb_081599_010--Hb_001279_190 Hb_001269_130 Hb_001269_130 Hb_081599_010--Hb_001269_130 Hb_000580_100 Hb_000580_100 Hb_000913_040--Hb_000580_100 Hb_000953_130 Hb_000953_130 Hb_000913_040--Hb_000953_130 Hb_007390_020 Hb_007390_020 Hb_000913_040--Hb_007390_020 Hb_011671_480 Hb_011671_480 Hb_000913_040--Hb_011671_480 Hb_001584_260 Hb_001584_260 Hb_000913_040--Hb_001584_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.15479 3.68545 6.27726 9.29184 1.77737 1.50103
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.81296 4.71516 1.16138 5.51495 4.04887

CAGE analysis